Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00296 ATGGAGCCTGTCAAGACCATTCGCAACAATTCTAAATACCCCTCCATTTTCTTAGCCATCTTTGTTCTCTTAGCTTCAGCATTGTCTTCAGCAAATGCCAAAATTCACGAGCACGAGTTTGTTGTTGAAGCAACTCCAGTGAAGAGGCTGTGCAAAACCCACAACACCATCACCGTGAATGGGCAATTCCCGGGCCCAACGTTGGAAATCAACAATGGAGACACTTTGGTCGTCAAAGTCACTAACAAAGCTCGCTACAATGTGACCATTCATTGGCACGGTGTTAGGCAAATGAGAACAGGATGGGCAGATGGACCAGAATTTGTGACTCAGTGCCCCATTCGTCCTGGAGGAAGTTACACCTACCGTTTTACCGTTCAAGGACAAGAAGGAACACTTTGGTGGCACGCTCATAGCTCATGGTTAAGGGCAACTGTTTATGGTGCTTTAATCATTCGTCCTAGGGAAGGAGAACCCTACCCTTTCCCCAAGCCAAAGCACGAGACACCCATTCTTCTTGGGGAATGGTGGGACGCAAACCCCATTGATGTTGTGAGGCAAGCCACAAGAACTGGGGGAGCTCCAAACGTGTCTGATGCATACACCATCAATGGTCAACCCGGTGATCTTTACAAGTGCTCTAGCAAAGAGACTACCATTGTCCCAATCCATTCCGGCGAGACCAACCTTCTACGTGTCATCAATGCTGCACTCAATCAACCTCTCTTCTTCACCGTCGCAAACCACAAACTCACCGCGGTTGGCGCCGATGCCTCCTACCTTAAACCCTTCACCACCAAAGTCCTTATGCTCGGACCCGGTCAAACCACCGACGTCCTCATCACCGCCGACCAGCCACCTTCCCGCTACTACATGGCCGCGCGTGCATACCAATCCGCCCAAAACGCCGCGTTCGACAACACCACCACCACCGCCATTCTCCACTACACATCACCCCACCATAATAACCATTCTCATCATCATCATCGTCATTCCAAAGGAGTGAAGAACAAAACCAGACCAATCATGCCCCCACTCCCTGCTTACAACGACACAAACACCGTCACTGCCTTCAGCAAAAGCTTCAGAAGCCCCAGAAAAGTTGAAGTCCCCACCGAAATCGACCAAAGCCTTTTCTTCACTGTCGGCTTAGGTATCAACAAGTGCCCCAAAAACTTCGGACCAAAGAGGTGTCAGGGACCCATTAATGGGACGAGGTTCACTGCGAGCATGAACAACGTGTCTTTTGTTCTCCCAAACAACGTGTCGATCTTGCAGGCTCACTACCTCGGAATCCCCGGAGTGTTCACCACTGATTTTCCGGGGAAGCCGCCGGTGAAGTTTGATTACACGGGGAACGTGAGCCGTTCACTGTGGCAACCTGTTCCCGGGACAAAGGCACACAAGTTGAAGTTTGGGTCCAGGGTGCAGATTGTGTTGCAGGACACTAGCATTGTTACTCCTGAGAACCACCCTATCCACCTTCACGGGTACGATTTCTACATCGTCGCAGAGGGGTTCGGGAACTTCGACCCCAAGAAAGATACCTCGAAATTCAACCTTGTTGATCCACCTTTGAGGAACACAGTGGCAGTGCCTGTAAATGGATGGGCAGTTATTCGATTTGTCGCTGATAACCCAGGTGCCTGGCTTATGCATTGTCACTTGGACGTTCACATCGGGTGGGGTTTGGCCACGGTGTTGTTGGTGGAGAACGGAGTTGGGAAATTGCAATCCATAGAGCCTCCTCCAGCGGATCTGCCTCTTTGTTAG 1773 0.5065 MEPVKTIRNNSKYPSIFLAIFVLLASALSSANAKIHEHEFVVEATPVKRLCKTHNTITVNGQFPGPTLEINNGDTLVVKVTNKARYNVTIHWHGVRQMRTGWADGPEFVTQCPIRPGGSYTYRFTVQGQEGTLWWHAHSSWLRATVYGALIIRPREGEPYPFPKPKHETPILLGEWWDANPIDVVRQATRTGGAPNVSDAYTINGQPGDLYKCSSKETTIVPIHSGETNLLRVINAALNQPLFFTVANHKLTAVGADASYLKPFTTKVLMLGPGQTTDVLITADQPPSRYYMAARAYQSAQNAAFDNTTTTAILHYTSPHHNNHSHHHHRHSKGVKNKTRPIMPPLPAYNDTNTVTAFSKSFRSPRKVEVPTEIDQSLFFTVGLGINKCPKNFGPKRCQGPINGTRFTASMNNVSFVLPNNVSILQAHYLGIPGVFTTDFPGKPPVKFDYTGNVSRSLWQPVPGTKAHKLKFGSRVQIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDPKKDTSKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGAWLMHCHLDVHIGWGLATVLLVENGVGKLQSIEPPPADLPLC 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00296 590 Gene3D - 397 590 IPR008972 -
Pumo1g00296 590 SUPERFAMILY Cupredoxins 32 181 IPR008972 -
Pumo1g00296 590 SUPERFAMILY Cupredoxins 162 365 IPR008972 -
Pumo1g00296 590 CDD CuRO_3_LCC_plant 435 573 IPR034289 GO:0005507
Pumo1g00296 590 NCBIfam laccase 33 590 IPR017761 GO:0046274|GO:0048046|GO:0052716
Pumo1g00296 590 PANTHER MULTI-COPPER OXIDASE 35 575 IPR045087 -
Pumo1g00296 590 Pfam Multicopper oxidase 440 572 IPR011706 GO:0005507|GO:0016491
Pumo1g00296 590 ProSitePatterns Multicopper oxidases signature 2. 553 564 IPR002355 GO:0005507
Pumo1g00296 590 Gene3D - 166 367 IPR008972 -
Pumo1g00296 590 Gene3D - 22 154 IPR008972 -
Pumo1g00296 590 FunFam Laccase 24 154 - -
Pumo1g00296 590 CDD CuRO_1_LCC_plant 38 154 IPR034288 GO:0005507
Pumo1g00296 590 Pfam Multicopper oxidase 168 317 IPR001117 -
Pumo1g00296 590 SUPERFAMILY Cupredoxins 370 590 IPR008972 -
Pumo1g00296 590 CDD CuRO_2_LCC_plant 170 316 IPR034285 -
Pumo1g00296 590 ProSitePatterns Multicopper oxidases signature 1. 548 568 IPR033138 -
Pumo1g00296 590 FunFam Laccase 166 368 - -
Pumo1g00296 590 Pfam Multicopper oxidase 42 156 IPR011707 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00296 Pumo-Chr1 4555369 4559796 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00296 K05909 - gmx:547704 1134.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00296 1 4555369 4559796 Pumo9g02276 9 55932891 55934680 PCT