Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00277 ATGGAAAACTCAGACGAACGAAACGAACAACTTCCCTTCTCTCCACCAAACCCTAACAATGCCGAAGATGAAGACGACGACATCGACGAACAAGAAGACGAAGACGAAGAAGAGGAAGAAGACGACGACAACGACGTCGTTTCGCAGGACCAATCCCCATTGTCGCGGCTGCGCGAGCAGCGGACGAAGCTGGAAACCCTGTCCCGGCGACTGGCCTCGGAGCTGGTCCCTATCCGCGTCCACGACGTGCTTATTCGCGGCAACACGAATACGAAGGATTGGGTGATCGAGGCGGAGCTCAAGCTCCTCGAGGACGCCGCCACCGTGCAGGAGCTCATTCGCGCCTCCGAAATCGCCCTCGCCAGGCTCCGCGGCCTCGATATTTTCGACTCCGCCGAGCTCTCGCTCCAGGCCGGGCCGCCGGAGCTTCCTCACACCGCCAATGTCGTCATTGACGTCGTCGAGACCGCCAACAAAATCTCCGGCGAATTCGGCGTTTACACCAAACCCGCGACTAGTTCTTGGACTGCTGAAGGTGGTCTTAAGTACAAAAACTTGTTTGGTTATGGTGATCTATGGGATGCCTCTTTGGCCTATGGTGCCAACCAAGCAACAGAGGTGAGTGTAGGAGCGTATGCCCCTCGACTGAAAGGATTGCTAACCCCTCTTGTAGCACGACTATCCATGCTTTCCCAAGATTGGCAAGAGTTTTCTTCATACAAAGAGCAGTTGTTAGGCTTGTCCCTTGGCTTAATCTCAACAAGGAACCATGACTTAGTCTACACTCTTGGATGGCGTACCTTGACTGATCAATCACAAATGTCATCCAGGTCTATAAGGAGGCAACTTGGGCATGGTTTACTATCATCTTTGAAGTATACATTTAAAATTGACAGGAGAAACTCACCAATTAGGCCTACAAATGGATATGCTTTTCTTTCTACCACTCACTTTGGTGGCCTTACACCAGATCATCGGAGCTTGCGATTTCTGCGCCAGGAATTTGATGTTCGCTGTGCCATCCCCTTTGGGTTTTATAATACGGCACTTAATCTTGGGATTTCTGCTGGTGCTGTTTTTCCGTGGGGGCATGGCTTCATGAACAAGCCATCTCCGCTTCCTGAAAGGTTTTATTTGGGTGGTGATTTCTCTCCAGTTTGCACCCTAGGAGGGCCGATAACATTGTGGGGATTTAAAACAAGGGGATTAGGTCCTACTGAACCACGAAGGCGAAGTAGAGATGGAATTATTGATGACAATGATGATTCCTCTAGATGGGACTTCATTGGAGGAGATCTTGCTGTTACTGCATTTGCAGACCTGTCTTTCGATCTTCCAATTAGGTGGTTGAGAGATCATGGAATTCATGGTCATGTTTTTGCTGGTGCTGGGAATACTGCTAAATTAACTCAGAATGAATATAAGCACTTCTCACCTCGGAAGTTCTTAGATTCCTTTCGAACTTCTGTGGGATGTGGATTTGTTGTTCCTACTAGACTTTTTCGCCTAGAGGGCAATTTCTATTACATACTCAAGCAGAATGAACAAGATCGTGGGAAAAGTGGATTTAGGTTCAGCTTCTCAGCTCCTTCTTAG 1596 0.4875 MENSDERNEQLPFSPPNPNNAEDEDDDIDEQEDEDEEEEEDDDNDVVSQDQSPLSRLREQRTKLETLSRRLASELVPIRVHDVLIRGNTNTKDWVIEAELKLLEDAATVQELIRASEIALARLRGLDIFDSAELSLQAGPPELPHTANVVIDVVETANKISGEFGVYTKPATSSWTAEGGLKYKNLFGYGDLWDASLAYGANQATEVSVGAYAPRLKGLLTPLVARLSMLSQDWQEFSSYKEQLLGLSLGLISTRNHDLVYTLGWRTLTDQSQMSSRSIRRQLGHGLLSSLKYTFKIDRRNSPIRPTNGYAFLSTTHFGGLTPDHRSLRFLRQEFDVRCAIPFGFYNTALNLGISAGAVFPWGHGFMNKPSPLPERFYLGGDFSPVCTLGGPITLWGFKTRGLGPTEPRRRSRDGIIDDNDDSSRWDFIGGDLAVTAFADLSFDLPIRWLRDHGIHGHVFAGAGNTAKLTQNEYKHFSPRKFLDSFRTSVGCGFVVPTRLFRLEGNFYYILKQNEQDRGKSGFRFSFSAPS 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00277 531 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 64 528 IPR039910 -
Pumo1g00277 531 MobiDBLite consensus disorder prediction 20 47 - -
Pumo1g00277 531 Coils Coil 21 41 - -
Pumo1g00277 531 FunFam Outer membrane OMP85 family protein 77 156 - -
Pumo1g00277 531 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 170 529 - -
Pumo1g00277 531 MobiDBLite consensus disorder prediction 1 60 - -
Pumo1g00277 531 Pfam Omp85 superfamily domain 185 528 IPR000184 GO:0019867
Pumo1g00277 531 FunFam Outer membrane OMP85 family protein 167 529 - -
Pumo1g00277 531 Gene3D membrane protein fhac 77 156 - -
Pumo1g00277 531 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00277 Pumo-Chr1 4369641 4374011 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00277 K07277 - gmx:100785408 962.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00277 1 4369641 4374011 Pumo1g00277 1 4369641 4374011 ECH
Pumo1g00277 1 4369641 4374011 Pumo9g02296 9 56144888 56148843 PCT