Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00259 ATGTCACTGAGGAGGAAGCACAAGCCATCATCGATGGCCACAAGCATCTCAGTATCTTTCACCGAAGAGGTCTCAATCTCGAGAGTTTCTTCAACTATCTCTTCAGTCATCATAATAACCCACCTCTCTCACCTTCTCTTGGGGTGCACCAAGATATGTCTTCACCGTTGTCTCATTACTTTCATTTATACTGGTCATAATTCCTATCTAACTGGGAACCAACTTAGCAGTGACTGCAGTGACTTCCCCATCATCAATGCACTGCAGAAGGGTGTAAGGGTGATTGAATTAGATATATGGCCTAATGAATCAAAGGATAACGTGGATGTTCTTCATGGAAGGACTTTGACATCTCCTGTGGCACTCATCAAATGTTTGAGGTCTATTAAGCAGCATGCCTTTGTTGCCTCAGAATATCCAGTTGTAATAACCTTAGAAGACCATCTTACTCCCGACCTTCAGGCCAAAGTGGCTGAGACACTACTATTTGCTCCTAGCTCAGAAAGCTTGAAGGAATTTCCTTCTCCTGAATCACTTAAAAGGAGGATTATTATATCAACCAAACCACCTAAGGAGTACCTTGAGGCAAAAGAAGTACAGGAAAAGGAGGAGGAATCACAAAAGGAAAAGCCTGCAAATGATGAAGAAGCATGGGGGAAGGAAGTCCCTAGTTTGAGAGGTGGCACTATCTCTGATTACAAGAATGTTGAGGATGATGATGTTCTTGATGATGAGGAAGATATTGATGAAGCAAAAAAGTCACGTCAAAATGCAGCAGACGAATACAGACGTTTAATTGCCATTCATGCTGGGAAGCCTAAAGGTGGGTTAACGGAATGTCTCAAAGTGGATCCTGATAAACTTGAAAAGGCTGCTGAAACTCATGGGAAAGAAATTGTCAGGTTTACTCAGCGAAATATACTGAGAGTGTATCCAAAAGGTACTCGCATTACCTCGACAAATTATAACCCATTGATCGGGTGGATGCATGGAGCTCAGATGGTTGCATTTAACATGCAGGGGTATGGTAGATCTCTTTGGTTGATGCAGGGAATGTTCAAAGCCAATGGCGGATGTGGTTATGTTAAAAAACCAGATTTTCTATTGAAGGTTGGTCCAAATAATGAGGTATTTGATCCTAAAGCTCATTTACCTGTGAAGACAACCTTGAAGGTGACTATATATATAGGGGAAGGATGGTTTCATGATTTCAAACATACACACTTTGATAAATTCTCACCCCCGGACTTCTACGCAAGAGTGGGGATTGCTGGAGTCCCTTATGATACTATTATGAAAAAAACTGAGAGTGTAGAGGACAATTGGTCACCTTCATGGAGTAAAGTATTTGAGTTTCCACTTGCTGTTCCAGAACTGGCTCTGCTTCGCATAGAAGTTCATGAGTATGACATGTCTGAGAAGGATGACTTTGGTGGCCAAACGTGCTTACCTGTATGGGAACTAAGAAGTGGAATTCGAGCAGTTCCACTGTATTCCCGTAAAGGAGATAAGTATGACAATGTGAAGGTTCTCATGCGCTTTGAATTCATTTGA 1554 0.4183 MSLRRKHKPSSMATSISVSFTEEVSISRVSSTISSVIIITHLSHLLLGCTKICLHRCLITFIYTGHNSYLTGNQLSSDCSDFPIINALQKGVRVIELDIWPNESKDNVDVLHGRTLTSPVALIKCLRSIKQHAFVASEYPVVITLEDHLTPDLQAKVAETLLFAPSSESLKEFPSPESLKRRIIISTKPPKEYLEAKEVQEKEEESQKEKPANDEEAWGKEVPSLRGGTISDYKNVEDDDVLDDEEDIDEAKKSRQNAADEYRRLIAIHAGKPKGGLTECLKVDPDKLEKAAETHGKEIVRFTQRNILRVYPKGTRITSTNYNPLIGWMHGAQMVAFNMQGYGRSLWLMQGMFKANGGCGYVKKPDFLLKVGPNNEVFDPKAHLPVKTTLKVTIYIGEGWFHDFKHTHFDKFSPPDFYARVGIAGVPYDTIMKKTESVEDNWSPSWSKVFEFPLAVPELALLRIEVHEYDMSEKDDFGGQTCLPVWELRSGIRAVPLYSRKGDKYDNVKVLMRFEFI 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00259 517 Coils Coil 241 268 - -
Pumo1g00259 517 ProSiteProfiles C2 domain profile. 370 499 IPR000008 -
Pumo1g00259 517 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 61 516 IPR001192 GO:0035556
Pumo1g00259 517 Pfam Phosphatidylinositol-specific phospholipase C, X domain 61 188 IPR000909 -
Pumo1g00259 517 MobiDBLite consensus disorder prediction 194 221 - -
Pumo1g00259 517 Gene3D Phosphatidylinositol (PI) phosphodiesterase 60 382 IPR017946 GO:0006629|GO:0008081
Pumo1g00259 517 CDD C2_PLC_like 387 516 - -
Pumo1g00259 517 SMART C2_3c 389 497 IPR000008 -
Pumo1g00259 517 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 287 368 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Pumo1g00259 517 Pfam C2 domain 391 491 IPR000008 -
Pumo1g00259 517 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 61 188 - -
Pumo1g00259 517 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 389 516 IPR035892 -
Pumo1g00259 517 MobiDBLite consensus disorder prediction 194 256 - -
Pumo1g00259 517 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 277 367 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Pumo1g00259 517 Gene3D C2 domain 384 517 IPR035892 -
Pumo1g00259 517 SMART plcx_3 50 188 IPR000909 -
Pumo1g00259 517 SUPERFAMILY PLC-like phosphodiesterases 61 380 IPR017946 GO:0006629|GO:0008081
Pumo1g00259 517 SMART plcy_3 262 369 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Pumo1g00259 517 PRINTS Phospholipase C signature 172 189 IPR001192 GO:0035556
Pumo1g00259 517 PRINTS Phospholipase C signature 328 346 IPR001192 GO:0035556
Pumo1g00259 517 PRINTS Phospholipase C signature 56 74 IPR001192 GO:0035556
Pumo1g00259 517 PRINTS Phospholipase C signature 307 328 IPR001192 GO:0035556
Pumo1g00259 517 PRINTS Phospholipase C signature 483 493 IPR001192 GO:0035556
Pumo1g00259 517 PRINTS Phospholipase C signature 82 102 IPR001192 GO:0035556
Pumo1g00259 517 FunFam Phosphoinositide phospholipase C 384 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00259 Pumo-Chr1 3908801 3912506 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00259 61 517 Acyl Lipid Metabolism Gene Families AT3G55940 68.267 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00259 K05857 - gmx:547865 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00259 1 3908801 3912506 Pumo9g02321 9 56446602 56451909 ECH
Pumo9g01551 9 43592997 43602411 Pumo1g00259 1 3908801 3912506 ECH
Pumo1g00259 1 3908801 3912506 Pumo1g00259 1 3908801 3912506 ECH
Pumo1g00259 1 3908801 3912506 Pumo9g02321 9 56446602 56451909 PCT