Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00258 ATGGCCACCCACAACTACAAAGTGTTCAGCTGCTTTAACAGGAAGTTCACCGTCACCGAACCGGCCCCACCGCCGGACGTCCAAAAAGCGTTTTCTGAATTCGCCGGCGGCGCCTCCTCCCTGTCCGGCGATCACCTCCTCCGGTTCCTGGAGGAGCACCAGGGCGAAGTGGACTGCACCGCAGCGGATTCCGAGGGGATCCTCCTGCAATTGCGGAAAGAGGATCGGGAAAGTGGAGTCGATCTCCACGACTTCTTCCATTTCCTGCAACACGACGATTTCAATAGCCCCATCAAATCTCTGGTACATCATGATATGAATGCTCCATTGTCACATTATTTCATATATACTGGGCACAATTCCTATCTGACTGGGAATCAACTGAGCAGTGACTGCAGTGATGAGCCAATCATAAAGGCTTTGCAACGAGGTGTGCGAGTAATTGAACTAGATTTATGGCCAAATTCAGACAAAGATGATATCGATGTAGTTCATGGAAGGACTCTTACCACTCCTGTCTCACTCATCCAATGTTTGAAGTCCATCAAAAAGTATGCTTTTGTTAAATCTCACTACCCACTCATTATAACTTTAGAAGATCACCTTACTCCAGATCTTCAAGCTAAAGTTGCAGAGGTCCGAATTCTTATATCAACCAAACCACCAAAAGAATTTCTTGAATCCAAAGAATGTGATGACAAGGACAATGAAAAGGAATCAACTGACAAGGTTTCATCATTGCCAGACCAAACTAATGAACCGGAAACTGATGATAAGAGTGCTCCTGAGTACAAACGCTTGATTACAATCCATGCTGGGAAACCGAAGGGTGACATACAGGATGCATTAAAAGCTGCTGGCGAAGTTAGGCGCTTAAGCTTGAGTGAACAAGCACTTGAAAAGGCTTCTGAATCTTATGGAGCTGATATTGTTAGGTTTACGCAGAAGAATATTCTCAGAGTATATCCAAAGGGAACACGTCTCAATTCCTCAAATTACAAGCCACACATAGGGTGGACATACGGAGCTCAAATGGTTGCGTTTAACATGCAGGGGTATGGCAAATCACTTCGATACATGCAAGGAATGTTTAGAGCAAATGGAGGGTGCGGTTATGTGAAAAAGCCTGACTTTCTAATTGAAAAGGGTCCACATAATGAGGTTTTTGATCCTAAAAGAACATCGCCAGTGAAGAAAACATTAAAGGTAAAAGTCTATATGGGGACCGGTTGGAGCTTAGATTTCAGCCAAACAGACTTTGATACTTACTCGCCACCAGACTTCTATGTTAAGGTTTGTATTGTTGGAGTTCCTGCTGATATGGCCAAGAAGAAAACAAGTGTAATTTCAAATAACTGGTTTCCCGTCTGGGACGAAGAGTTAGATTTCACTTTGACTGTTCCAGAGCTGGCTTTGCTCCGCATAGAAGTTCGAGATGATGATAAGAGTCAAAAGGATGACTTTGGTGGACAGACGTGTTTGCCAGTCTCAGAGCTAAAACCTGGATTCCGATCAGTCCCTCTGTATGATGAAAAGGGTGACAAATTAAAATCTGTGAAGCTTTTAATGCGGTTTCAGTTTAGATGA 1587 0.4379 MATHNYKVFSCFNRKFTVTEPAPPPDVQKAFSEFAGGASSLSGDHLLRFLEEHQGEVDCTAADSEGILLQLRKEDRESGVDLHDFFHFLQHDDFNSPIKSLVHHDMNAPLSHYFIYTGHNSYLTGNQLSSDCSDEPIIKALQRGVRVIELDLWPNSDKDDIDVVHGRTLTTPVSLIQCLKSIKKYAFVKSHYPLIITLEDHLTPDLQAKVAEVRILISTKPPKEFLESKECDDKDNEKESTDKVSSLPDQTNEPETDDKSAPEYKRLITIHAGKPKGDIQDALKAAGEVRRLSLSEQALEKASESYGADIVRFTQKNILRVYPKGTRLNSSNYKPHIGWTYGAQMVAFNMQGYGKSLRYMQGMFRANGGCGYVKKPDFLIEKGPHNEVFDPKRTSPVKKTLKVKVYMGTGWSLDFSQTDFDTYSPPDFYVKVCIVGVPADMAKKKTSVISNNWFPVWDEELDFTLTVPELALLRIEVRDDDKSQKDDFGGQTCLPVSELKPGFRSVPLYDEKGDKLKSVKLLMRFQFR 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00258 528 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 104 212 - -
Pumo1g00258 528 Pfam Phosphatidylinositol-specific phospholipase C, X domain 106 213 IPR000909 -
Pumo1g00258 528 PRINTS Phospholipase C signature 318 339 IPR001192 GO:0035556
Pumo1g00258 528 PRINTS Phospholipase C signature 109 127 IPR001192 GO:0035556
Pumo1g00258 528 PRINTS Phospholipase C signature 339 357 IPR001192 GO:0035556
Pumo1g00258 528 PRINTS Phospholipase C signature 135 155 IPR001192 GO:0035556
Pumo1g00258 528 PRINTS Phospholipase C signature 494 504 IPR001192 GO:0035556
Pumo1g00258 528 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 293 379 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Pumo1g00258 528 Gene3D C2 domain 395 528 IPR035892 -
Pumo1g00258 528 ProSiteProfiles C2 domain profile. 381 510 IPR000008 -
Pumo1g00258 528 SMART plcx_3 104 220 IPR000909 -
Pumo1g00258 528 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 292 378 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Pumo1g00258 528 SUPERFAMILY EF-hand 5 106 IPR011992 -
Pumo1g00258 528 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 214 527 IPR001192 GO:0035556
Pumo1g00258 528 Pfam C2 domain 401 502 IPR000008 -
Pumo1g00258 528 CDD C2_PLC_like 398 528 - -
Pumo1g00258 528 SMART C2_3c 400 508 IPR000008 -
Pumo1g00258 528 Gene3D - 22 98 - -
Pumo1g00258 528 SUPERFAMILY PLC-like phosphodiesterases 104 381 IPR017946 GO:0006629|GO:0008081
Pumo1g00258 528 MobiDBLite consensus disorder prediction 226 263 - -
Pumo1g00258 528 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 400 527 IPR035892 -
Pumo1g00258 528 FunFam Phosphoinositide phospholipase C 395 528 - -
Pumo1g00258 528 MobiDBLite consensus disorder prediction 226 244 - -
Pumo1g00258 528 Gene3D Phosphatidylinositol (PI) phosphodiesterase 101 392 IPR017946 GO:0006629|GO:0008081
Pumo1g00258 528 SMART plcy_3 264 380 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00258 Pumo-Chr1 3897955 3905444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00258 2 527 Acyl Lipid Metabolism Gene Families AT2G40116 57.833 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00258 K05857 - gmx:100799027 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00258 1 3897955 3905444 Pumo9g02322 9 56459779 56464400 ECH
Pumo1g00258 1 3897955 3905444 Pumo1g00258 1 3897955 3905444 ECH
Pumo1g00258 1 3897955 3905444 Pumo9g02322 9 56459779 56464400 PCT