Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00257 ATGAAAACAGAGAAAAACAGAGGCTCTGTTTCCAAGGGAAGGGTGAAAATGAAAATGGAGATGTACAAGATCAAGATGCTAAATTTCTTGACCAAAAAAGGTGAAGTCCACAAGGCAGAACCACCTCTGGACCTTAAGGAAGCCTTTTCCGAGTTTGCCAAAGGAGGGAACCAAATGAAGAAGGATCAGCTACTTCGGTTCATGGTGGAACACCAGGGAGAAAATATCAACACCGTTGAGGAATTGGATAAAAAAGTTGAAAAGTTTTTTCAAGTTGGAAGTTCTAGCACTAAAACTAGCACTACAAGACAAGGATTAAGCCTCAGTGACTTCATCGATTTTCTGCTTCTTCATGATTTCAATGGTCCCTTGAAAGACGAGGTACATCATGATATGAATGCTCCCTTGTCACATTATTTCATGTTTACGGGACACAATTCCTATCTGACTGGGAATCAACTTACCAGTGAGAGCAGTGACGAGCCAATTATAGAGGCTTTGAAACAAGGTGTACGAGTAATTGAACTAGATTTATGGCCATCTAAAGCTTCAGCTAATGATGGAATTAAAGTGGTTCACGGAAGGACTTTTACCACTCCAGTCCCGGTATCCAAATGTCTACAATCCATAAAGAAATATGCATTTTGCAAATCTGATTATCCAGTAATTCTAACTTTGGAAGACCACCTAACACCAAAACATCAGGATAAATTTGCAGAAATGGCAACAAAAATATTTGGAGAAATGCTTTATTGTCCTCAGACAGATTATTTGACAGAATTCCCCTCACCAGAATCTTTGAAAAAACGGATAATTATATCAACCAAACCACCAAAGAAATATCCACAATCTGATAGTATCAGCAAACCTGTGCCAAATGGAAGTGAACCATCTGAAGAAGAATCATGGGGCCTCGAATTGCCAGATTCTGTGGCTAAACAGAAAACTGAGGACAGGAATGCAAGTGATGAAGATCAGGAAGAAATAAATACAAGTGATAACAAACCAAACAAACAAGGTGTGCGTCAATACAAACACTTGATTGCAATCCATGGTGGGAAATCTGAAGGTTCTATGAAGGATCGACTGAAAGATGATGCTAAAGTTAGACGGCTAAGTTTGAGTGAGAAGAAACTCAAAAGTGCTTCTGAGTCTCATGCAGCTGACCTTATTAGGTTCACACAGAAAAATATCCTCAGAGTTTTTCCTAAAGGTGAACGTGTCAAATCCACAAATTTCAAGCCATATTTAGGGTGGCTGTATGGAGCTCAGATGGTTGCATTCAATATGCAGGGGCATGGCAAATCACTACGGTTGATGCAAGGGATGTTCAGAGCAAATGGAGGGTGTGGTTATGTTAAAAAGCCTGAATTTCTGATCCGAACACTTCCACGTGAAGAGGTGTTTGATCCTAAAAGTTTAACACTGCCAGTGAAACAGATATTAAAAGTAAAAGTATACAATGGAGATGGCTGGAGTTCAGATTTCAGTCCAACACACTTTGATCGATTCTCTCCACCTGACTTTTACACAAAGGTCTGTATTGTTGGAGTGCCAGCTGATTGTGCCAAGAACAAAACAAGTGTAAAGATGGATACATGGTATCCTGTTTGGGATGAAGAATTTGCATTCAAATTGAGTGTTCCAGAGCTTGCTTTGCTTCGGATAGAAGTAAAGGACAAAGATCAGGGAAAGGATGATTTTGCGGGACAAACTTGTTTGCCAATATCAGAGCTAAGGCATGGATTTCGGTCAGTCCCTCTGTATGACCGAAAGGGAAAGAAGTATAAATCTGTGAAGCTTCTAATGCGGTTTAAGCTTGAAACTCCAAATAAATTGTAG 1842 0.3974 MKTEKNRGSVSKGRVKMKMEMYKIKMLNFLTKKGEVHKAEPPLDLKEAFSEFAKGGNQMKKDQLLRFMVEHQGENINTVEELDKKVEKFFQVGSSSTKTSTTRQGLSLSDFIDFLLLHDFNGPLKDEVHHDMNAPLSHYFMFTGHNSYLTGNQLTSESSDEPIIEALKQGVRVIELDLWPSKASANDGIKVVHGRTFTTPVPVSKCLQSIKKYAFCKSDYPVILTLEDHLTPKHQDKFAEMATKIFGEMLYCPQTDYLTEFPSPESLKKRIIISTKPPKKYPQSDSISKPVPNGSEPSEEESWGLELPDSVAKQKTEDRNASDEDQEEINTSDNKPNKQGVRQYKHLIAIHGGKSEGSMKDRLKDDAKVRRLSLSEKKLKSASESHAADLIRFTQKNILRVFPKGERVKSTNFKPYLGWLYGAQMVAFNMQGHGKSLRLMQGMFRANGGCGYVKKPEFLIRTLPREEVFDPKSLTLPVKQILKVKVYNGDGWSSDFSPTHFDRFSPPDFYTKVCIVGVPADCAKNKTSVKMDTWYPVWDEEFAFKLSVPELALLRIEVKDKDQGKDDFAGQTCLPISELRHGFRSVPLYDRKGKKYKSVKLLMRFKLETPNKL 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00257 613 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 26 607 IPR001192 GO:0035556
Pumo1g00257 613 SMART plcx_3 130 276 IPR000909 -
Pumo1g00257 613 MobiDBLite consensus disorder prediction 311 332 - -
Pumo1g00257 613 ProSiteProfiles C2 domain profile. 463 590 IPR000008 -
Pumo1g00257 613 Gene3D - 40 122 - -
Pumo1g00257 613 FunFam Phosphoinositide phospholipase C 476 608 - -
Pumo1g00257 613 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 130 276 - -
Pumo1g00257 613 SUPERFAMILY PLC-like phosphodiesterases 130 461 IPR017946 GO:0006629|GO:0008081
Pumo1g00257 613 MobiDBLite consensus disorder prediction 279 295 - -
Pumo1g00257 613 Pfam Phosphatidylinositol-specific phospholipase C, X domain 132 276 IPR000909 -
Pumo1g00257 613 Gene3D C2 domain 475 612 IPR035892 -
Pumo1g00257 613 Pfam C2 domain 481 581 IPR000008 -
Pumo1g00257 613 Gene3D Phosphatidylinositol (PI) phosphodiesterase 126 473 IPR017946 GO:0006629|GO:0008081
Pumo1g00257 613 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 481 606 IPR035892 -
Pumo1g00257 613 SMART plcy_3 344 460 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Pumo1g00257 613 PRINTS Phospholipase C signature 398 419 IPR001192 GO:0035556
Pumo1g00257 613 PRINTS Phospholipase C signature 161 181 IPR001192 GO:0035556
Pumo1g00257 613 PRINTS Phospholipase C signature 135 153 IPR001192 GO:0035556
Pumo1g00257 613 PRINTS Phospholipase C signature 260 277 IPR001192 GO:0035556
Pumo1g00257 613 PRINTS Phospholipase C signature 419 437 IPR001192 GO:0035556
Pumo1g00257 613 PRINTS Phospholipase C signature 574 584 IPR001192 GO:0035556
Pumo1g00257 613 SMART C2_3c 481 588 IPR000008 -
Pumo1g00257 613 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 373 459 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Pumo1g00257 613 CDD C2_PLC_like 479 608 - -
Pumo1g00257 613 MobiDBLite consensus disorder prediction 274 341 - -
Pumo1g00257 613 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 370 458 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Pumo1g00257 613 SUPERFAMILY EF-hand 41 132 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00257 Pumo-Chr1 3892094 3896360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00257 22 608 Acyl Lipid Metabolism Gene Families AT2G40116 54.501 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00257 K05857 - gmx:100803435 1067.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00257 1 3892094 3896360 Pumo1g00257 1 3892094 3896360 ECH
Pumo1g00257 1 3892094 3896360 Pumo9g02323 9 56467285 56480168 PCT