Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00180 ATGGCAGAGGCACAAAACAGAGGAGCAAGATGGTCTTTCAATGGAATGACGGCTCTCGTCACCGGCGGCACCCGTGGGATCGGGCACGCCATAGTGAGTGACTTAGCTGCTTTTGGTGCTGCTGTGCACACTTGCTCCAGGACTCAGACAGAGCTCAACAAGTGCTTACAAGAGTGGCAGAGTCAGGGGTTTCAGGTTACTGGGTCGGTGTGTGATGTGTCCTCTCCATCCCAGAGAGAGAAGCTCATTGAGGAAGTGGCATCCACCTTCAATGGCAAGCTTAACATCTATGTAAACAACGTTGGAACAAACTTTAGAAAGCCAACCATTGAGTACACTGCTGAAGAATATTCACAGCTGATGACAGTTAATTTAGACTCCTCATTCCATCTGTGCCAGCTTGCATATCCTCTTCTGAAAGCATCTGAAAAGGGAAGCATTGTGTTCATTTCATCTGTTGCTGGTGTGGTGAGCTTGGGTACTGGAGCTGTCTATGCAGCAAGTAAAGCTGCAATTAATCAGCTTACAAAAAACCTGGCTTGTGAATGGGCCAAAGACAACATAAGGAGCAACTGTGTTGTACCATGGGCAACCAGAACCCCACTTGTAGAACATTTGTTGAGAGACCAAAAGTTTGTGGATGATATTATGTCTCGGACTCCAATTAAGCGTATAGCAGAACCGGAAGAAGTGTCATCGTTGGTGACTTTCCTTTGCTTGCCTGCTGCTTCTTACATCACTGGACAGATTATTTGTGTTGATGGAGGATTAACTGTGAATGGATTTCAACCCAGCATGAGAATTACCTGA 810 0.4617 MAEAQNRGARWSFNGMTALVTGGTRGIGHAIVSDLAAFGAAVHTCSRTQTELNKCLQEWQSQGFQVTGSVCDVSSPSQREKLIEEVASTFNGKLNIYVNNVGTNFRKPTIEYTAEEYSQLMTVNLDSSFHLCQLAYPLLKASEKGSIVFISSVAGVVSLGTGAVYAASKAAINQLTKNLACEWAKDNIRSNCVVPWATRTPLVEHLLRDQKFVDDIMSRTPIKRIAEPEEVSSLVTFLCLPAASYITGQIICVDGGLTVNGFQPSMRIT 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00180 269 PRINTS Glucose/ribitol dehydrogenase family signature 92 103 IPR002347 -
Pumo1g00180 269 PRINTS Glucose/ribitol dehydrogenase family signature 139 155 IPR002347 -
Pumo1g00180 269 PRINTS Glucose/ribitol dehydrogenase family signature 165 184 IPR002347 -
Pumo1g00180 269 PRINTS Glucose/ribitol dehydrogenase family signature 186 203 IPR002347 -
Pumo1g00180 269 PRINTS Glucose/ribitol dehydrogenase family signature 221 241 IPR002347 -
Pumo1g00180 269 PRINTS Glucose/ribitol dehydrogenase family signature 17 34 IPR002347 -
Pumo1g00180 269 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 260 IPR036291 -
Pumo1g00180 269 FunFam Short-chain dehydrogenase reductase 2 263 - -
Pumo1g00180 269 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 152 180 IPR020904 GO:0016491
Pumo1g00180 269 Gene3D - 7 261 - -
Pumo1g00180 269 PANTHER TROPINONE REDUCTASE 10 261 IPR045000 GO:0016491
Pumo1g00180 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 IPR002347 -
Pumo1g00180 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 IPR002347 -
Pumo1g00180 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 IPR002347 -
Pumo1g00180 269 Pfam Enoyl-(Acyl carrier protein) reductase 24 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00180 Pumo-Chr1 2900988 2904290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00180 10 264 Miscellaneous Gene Families AT2G29290 63.424 1.14e-121 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00180 K08081 - gmx:100800947 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00180 1 2900988 2904290 Pumo1g00172 1 2826012 2829599 ECH
Pumo1g00180 1 2900988 2904290 Pumo1g00180 1 2900988 2904290 ECH