Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00172 ATGGCGAACCCAGAAGGCAGTAGCAGAGGCTCAAGATGGTCCCTTAAGGGAACCACTGCTCTCGTTACTGGAGGGACACGTGGAATCGGGCACGCTGTGGTGGAGGAACTAGCGGAGTTTGGTGCCACAGTGTACACTTGTTCGAGGAATGAAGTGGAGCTGAATGCATGCTTGAAGGAGTGGAAAGAGAAGGGATTTTCGGTTTTTGGGTCGGTTTGTGATGCGTCTTCTCCACTCCAAAGAGAGAACCTCATTCAGCAAGTGGCCTCTGCCTTCAACGGCAAGCTCAACATACTTATAAACAATGTTGGAACAAATGTGAGGAAGCCAACAATCGAGTATACAGCCGAAGAATATTCAAAAGTGATGGCAACTAACTTGGACTCTGCATACCATCTGTGCCAACTTGCATATCCTCTTCTTAAAGCATCTGGAAATGGAAGTATTGTGTTCATTTCCTCTGTTGCAGGTCAGACAAGTGTAGGTTCTGGAGCCATTTATGCAGCAACTAAAGCTGCCATCGATCAGCTTACCAAATATCTTGCTTGTGAATGGGCAAAAGACAATATAAGAAGCAACAGTGTTGCACCCTGGTATACCATAACATCACTTGTGGAACCTTTGCTTAAGAACAAACAGCTTGTTAATGAGATAATATCTCGAACGCCGATAAAGCGGATGGCAGAAACACATGAAGTTTCATCCTTGGTGACTTTCCTTTGCCTGCCAGCAGCATCCTACATCACTGGACAGATAGTTTCTGTTGATGGAGGATTCACTGCTAATGGATTTCGACCCAGCATGAGAATTTCTTAA 816 0.4522 MANPEGSSRGSRWSLKGTTALVTGGTRGIGHAVVEELAEFGATVYTCSRNEVELNACLKEWKEKGFSVFGSVCDASSPLQRENLIQQVASAFNGKLNILINNVGTNVRKPTIEYTAEEYSKVMATNLDSAYHLCQLAYPLLKASGNGSIVFISSVAGQTSVGSGAIYAATKAAIDQLTKYLACEWAKDNIRSNSVAPWYTITSLVEPLLKNKQLVNEIISRTPIKRMAETHEVSSLVTFLCLPAASYITGQIVSVDGGFTANGFRPSMRIS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00172 271 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 262 IPR036291 -
Pumo1g00172 271 Pfam Enoyl-(Acyl carrier protein) reductase 26 260 - -
Pumo1g00172 271 FunFam Short-chain dehydrogenase reductase 4 264 - -
Pumo1g00172 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 105 IPR002347 -
Pumo1g00172 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Pumo1g00172 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 IPR002347 -
Pumo1g00172 271 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Pumo1g00172 271 PRINTS Glucose/ribitol dehydrogenase family signature 94 105 IPR002347 -
Pumo1g00172 271 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Pumo1g00172 271 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Pumo1g00172 271 PRINTS Glucose/ribitol dehydrogenase family signature 167 186 IPR002347 -
Pumo1g00172 271 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Pumo1g00172 271 PANTHER TROPINONE REDUCTASE 12 263 IPR045000 GO:0016491
Pumo1g00172 271 Gene3D - 3 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00172 Pumo-Chr1 2826012 2829599 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00172 12 264 Miscellaneous Gene Families AT2G29290 61.660 1.25e-115 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00172 K08081 - gmx:100819646 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00180 1 2900988 2904290 Pumo1g00172 1 2826012 2829599 ECH
Pumo1g00172 1 2826012 2829599 Pumo1g00172 1 2826012 2829599 ECH