Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00156 ATGCCTTTCATCTCCAAAATTCAGCGCCAATCCGATTACACTCTCTTCGGTTCCGCCACTCCCATCGTCATCGACAATGGCGCCTCCTATTTCCGCATTGGATGGGCAGGAGAGACTGAACCCCGTGTTGTTTTCCGCAACATTGTCCAAAGGCCACGCCACAAAACCACCGGAGAAACTGTCACTATTGTTGGTGACCATGATCCGGCATTAATGAAATACTTTGACTGTACTCGCTCTGGACCCCGCTCAGCATTTGACAGCAATGTTGTTTACCAGTTTGAAATCATGGAATATATTCTGGACTTTGGATTTGATCGGATGGGTGCAACAGGATCAGAGATTGATCATCCTGTCCTGATCACAGAATGTGTATGCAACCCAGTTCAGTCTCGTAGTAAAATGGGAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGCCTTCGGTGTTGACGCGGCATTCAGCTATAAATATAATCAACAACAAGGTGTTTGTGATAAAGATGGTCTTGCTATGTGTCCTGGATTCAATACAACTCATGTGATTCCGTTTGTAGATGGGGAGCCTATTTATAACGGATGCTGCCGTACTAATATCGGTGGATTCCATGTGACTGATTATTTAAAGCAACTTCTTTCACTTAAATATCCTTATCATATGGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTATATTGCACTGGACTATGCTTCTGAAGCTCGGTTGTTTCAGAAAGGAGCTAAGGAGGCTGAAGAAAAAACCAGATTTTGGCAGCTCCCTTGGGTTCCACCCCCAACCGAGGAGCTTCCTTCTGAGGAAGAAATTGCAAGAAAGGCAGCAATAAAAGAGAGACAAGGTCAAAGATTACGAGAAATGGCTGAGGCAAAGAGGTCATCTAGAATAAACGAATTGGAAAATGAATTGCATGGTTTGGAATTTCTTTTAAAACAGCTTGAACAAGTTGAAGACAGTGATGTTCCGTCTTTCCTATCAGAGACTGGTTATGTCTCTAGGCAGGAGATAGAATCTGCCCGCACTAAAGTTTCACAATCCTTACGGAAAGCAAAAGGTGAACCAAAGAATGAACAAGCTGAAACTGATAAGGCCAGCCCTAACACTAATGAGAAGTATACTCTTATAAACATCCCTGATGACATGCTCACCCCAGACCAGCTCATTGAAAAGAAGAAACAGTTGTCACTGAAATCCATGTCTGAAGGGCGGCAGCGATTAAAACAGAAGCGTTATGAAGAGGAATTGGAGCGAGAAAGGAAACAACAGCTAGAGGAGGAGAAACGCCTAGAGAACCCAGAGCTTTACTTGGAACAATTGCGTGCTAGATACAAAGACCTTTCAGAGAAAGTTGACCAAAGAAAACGGCTCAAGACAAATGGAGGTCATTCTAACGGAAATAACTTGGCTGGTGGCATTGGCCGTGGTGAGAGACTCAATGCTGCTCAAAGGGAGAGAATGCGCCTCTTGACAACTGCTGCCTTTGATCGCGGTAAGGGTGAGGATACATTTGGTGCCAAAGATGAAGATTGGCAACTTTACAAACTGATGAGCAAAGATAATGATGATGGTGATGAGGGACCAGATGAGGATGATGCAGAGCTAGCCCGCATCTCTTCAAGGCTACAGGATTTGGATCCAACATTTGTGCCCAAGTCAGAGACAGGTAGCTCTCAACCTGCTGAGGCGCCACGTGTCCGTCCTCTCACCAAAGAAGATTTTCAGATTGTTTTCGGTGTTGAAAGGTTCCGATGCCCCGAAATTTTGTTCAATCCAAACTGGATTGCGGTTGATCAGGTAGGGTTAGATGAGATGGCTGGGGTCTCAATAAGAAGGTTATCATGTAAAGATGAAGGCCTGGAAGAGAGACTCACTAACTCCATACTTGTGACTGGTGGAAGTTCTCTTTTCCCCGGCATCATTGAACGCCTTGAAGCCGGAATTCGGATGATTCGGCCATGTGGAGCACCCATAAAAGTGGTTAGAGCACTGGATCCTGTTATGGACGCGTGGCGCGGAGCTTCTGTGTTTGCATCAGCCCCACAATTTCATACACAAACTTTCAGTAGGATGGATTATTTTGAAAAAGGTGAAGACTGGCTCCGCAGTTATCAGCTTAAATATTCATTGTAA 2169 0.444 MPFISKIQRQSDYTLFGSATPIVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKTTGETVTIVGDHDPALMKYFDCTRSGPRSAFDSNVVYQFEIMEYILDFGFDRMGATGSEIDHPVLITECVCNPVQSRSKMGELLFETYGVPSIAFGVDAAFSYKYNQQQGVCDKDGLAMCPGFNTTHVIPFVDGEPIYNGCCRTNIGGFHVTDYLKQLLSLKYPYHMARFTWEKVEDLKMEHCYIALDYASEARLFQKGAKEAEEKTRFWQLPWVPPPTEELPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENELHGLEFLLKQLEQVEDSDVPSFLSETGYVSRQEIESARTKVSQSLRKAKGEPKNEQAETDKASPNTNEKYTLINIPDDMLTPDQLIEKKKQLSLKSMSEGRQRLKQKRYEEELERERKQQLEEEKRLENPELYLEQLRARYKDLSEKVDQRKRLKTNGGHSNGNNLAGGIGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDGDEGPDEDDAELARISSRLQDLDPTFVPKSETGSSQPAEAPRVRPLTKEDFQIVFGVERFRCPEILFNPNWIAVDQVGLDEMAGVSIRRLSCKDEGLEERLTNSILVTGGSSLFPGIIERLEAGIRMIRPCGAPIKVVRALDPVMDAWRGASVFASAPQFHTQTFSRMDYFEKGEDWLRSYQLKYSL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00156 722 MobiDBLite consensus disorder prediction 558 578 - -
Pumo1g00156 722 Gene3D Actin; Chain A, domain 4 547 611 - -
Pumo1g00156 722 FunFam ARP5 actin-related protein 5 homolog 612 681 - -
Pumo1g00156 722 SUPERFAMILY Actin-like ATPase domain 19 159 IPR043129 -
Pumo1g00156 722 Pfam Actin 587 714 IPR004000 -
Pumo1g00156 722 Pfam Actin 19 269 IPR004000 -
Pumo1g00156 722 FunFam Actin-related protein 5 18 170 - -
Pumo1g00156 722 PANTHER ACTIN 21 710 IPR004000 -
Pumo1g00156 722 SMART actin_3 19 718 IPR004000 -
Pumo1g00156 722 Gene3D - 682 710 - -
Pumo1g00156 722 Gene3D - 176 202 - -
Pumo1g00156 722 MobiDBLite consensus disorder prediction 406 426 - -
Pumo1g00156 722 MobiDBLite consensus disorder prediction 355 373 - -
Pumo1g00156 722 Coils Coil 449 469 - -
Pumo1g00156 722 Gene3D - 612 681 - -
Pumo1g00156 722 SUPERFAMILY Actin-like ATPase domain 170 714 IPR043129 -
Pumo1g00156 722 FunFam Putative actin-related protein 5 682 710 - -
Pumo1g00156 722 FunFam Actin-related protein 5 203 257 - -
Pumo1g00156 722 Coils Coil 419 445 - -
Pumo1g00156 722 Gene3D - 18 170 - -
Pumo1g00156 722 FunFam Actin-related protein 5 582 611 - -
Pumo1g00156 722 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Pumo1g00156 722 Coils Coil 309 329 - -
Pumo1g00156 722 Gene3D Actin; Chain A, domain 4 203 256 - -
Pumo1g00156 722 MobiDBLite consensus disorder prediction 348 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00156 Pumo-Chr1 2575724 2581062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00156 588 709 Miscellaneous Gene Families AT3G53750 34.426 8.01e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00156 K11672 - gmx:100808396 1338.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00156 1 2575724 2581062 Pumo1g00156 1 2575724 2581062 ECH
Pumo1g00156 1 2575724 2581062 Pumo9g02429 9 58532915 58539190 PCT