Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00154 ATGGTGTTGAAGAAGAGGGTAGATTATGGATTTAATGGCTTTCGAGTTCCTGTTATACCTAAAGCTCCTAGATCAGTGAGAAGGAGGGGTGCTCTCAACAAAGCAGTTGAGGATGGTCGAGTTTGTGCTATTGAACTGCTGGCATCTTTAGCTGGTCAGTTGTTGCAGGAGAGTGAAAGTTCTGCTTCCAGCAATGCATCTGAAGGAAATCATCAGCCTGCCTTTAGCCAAGGTGCCATTGAGCAAGATAGACAAGATGAAGTTAAACCATTAAAAACAGAGGAAATTCATCAGGGAAGTTGTGCAGAGAGTACTTTTAAGACTGAGGTAGCCTCACAAAACAGTAGTCAGAAACCTCTTTCACATACCAAAACTGGTTGTTCATTAGGACATGTTTCAGTTAATAATAGTTCTGACTGTTGTGAGAAGGTTGAAGCTGATGTGAAGTCTGAAATTTTCGAATGGGGTAATAAATTTGGGAATTATTCTAATAGATTAGTAGAAACACCTGAAAATTTTAGGGAGTCTAGTGATGGTAACATAAAGAATGGATTTAAACGGGAACAGGAGGCTGGAAGTTCATGCATTCGGGGATCAAATTTAGCTGATAAATGTAGTTTGGAGGACCACTTAGAATTGTATGTATCTCCTGCACTAATTGACTCAAAAAGTAATATTAAATCTCCATTTCATAGGAAATCTTTTCCCAGTGCTTCCTTTTCCAGGCATGGGAATGGTATTAAGTTAGGATTTAGAGATGATGACGAAAACTTTTTAAGGTGCAAAAAGGTTTGCACGAAGTCAAAGGCCTTTAGGTCTCCACGACGCATTGCACACCGAAGAATCAGGAATTTGATGTCTTCCAAATACTGGAAGACAGCTCCAAAGTTGAAGGACTGTGAACTTTCTAGATCTGAATTTGCAGATCTAGGAATACCTCGTTATCATAAGAGAAAGACTTGTTATGGTTTTGAAAGATCTCAGCACAATGCAATTGTTAAAAAGAGGAAATTCGTTGACCGGGTTTCAGGGCTAACTTCTGATGGAGGATTCAGTAGCGAGAGTGTGTCCAATTCACCTCAGAAAGGGATGGATGGAGACAAGCCTAGCTCATCTGCAAAATTGCATGTACCTAAGGCTAAGGATTCTCATGTAAAGTTTAGCATCAAGTCAATAAGGGTACCAGAGCTTTATATTGAGGTTCCTGAAACTGCAACTGTTGGCTCACTAAAGAGGACAATCATGGAGGCAGTGATGGCTATACTTGGAGGTGGTGCACATGTTGGTGTTCTTCATCAGGGGAAAAAAGTTAGAGATGACAATAGAACACTTGTGCAGACTGGTATATCTTGCAATGAAAATTTGGATACCCTGAGTTTCATGTTGGAGCCCACTTCACTACAAGCTTCTCCAACTGTTTGTGTTGGTGATCCTTCTTCTCAATGTGAAACATCCCAGCCTACCAGGCCCACAGAAACTCCTGTCTTAGATTCAGGAATTACTGATACCTTGCATGACTCACCCTTGCTGACATATCCGGGCAACCTAATTGAAAGTAACCATGAGTCCACTTCTTCACCCGCCGACACTACAGTTGACAAAATAACACCTGATTCCAGAGCGATAGTTGCTGTTCCAGCTACCACAGAAACATTAGCTGTGGTTCCTGTGAGTCAGAAAACCAAGCGCTCTGAGTTTGTACAGCGTCGAACCAGGAGACCATTCTCTGTGGCTGAGGTAGAAGCACTTGTTCACGCAGTTGAGGAACTCGGAACTGGGAGGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTATGTAGACTTAAAGGATAAATGGAAAACATTGGTGCACACTGCAACAATCTCCCCTCAACAGAGGAGAGGAGAACCAGTACCTCAGGAGCTCTTGGACAGAGTTTTGGCTGCTCATGCTTTCTGGTCTCAGCACCAAGCCAAGCAACATGGCAAGCATCAAGCTGGACCTGGAACCTTGAAGATTACAGAAGCCTCAGCTGAAAGACCGTGTGTGTGTTGA 2052 0.4264 MVLKKRVDYGFNGFRVPVIPKAPRSVRRRGALNKAVEDGRVCAIELLASLAGQLLQESESSASSNASEGNHQPAFSQGAIEQDRQDEVKPLKTEEIHQGSCAESTFKTEVASQNSSQKPLSHTKTGCSLGHVSVNNSSDCCEKVEADVKSEIFEWGNKFGNYSNRLVETPENFRESSDGNIKNGFKREQEAGSSCIRGSNLADKCSLEDHLELYVSPALIDSKSNIKSPFHRKSFPSASFSRHGNGIKLGFRDDDENFLRCKKVCTKSKAFRSPRRIAHRRIRNLMSSKYWKTAPKLKDCELSRSEFADLGIPRYHKRKTCYGFERSQHNAIVKKRKFVDRVSGLTSDGGFSSESVSNSPQKGMDGDKPSSSAKLHVPKAKDSHVKFSIKSIRVPELYIEVPETATVGSLKRTIMEAVMAILGGGAHVGVLHQGKKVRDDNRTLVQTGISCNENLDTLSFMLEPTSLQASPTVCVGDPSSQCETSQPTRPTETPVLDSGITDTLHDSPLLTYPGNLIESNHESTSSPADTTVDKITPDSRAIVAVPATTETLAVVPVSQKTKRSEFVQRRTRRPFSVAEVEALVHAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTATISPQQRRGEPVPQELLDRVLAAHAFWSQHQAKQHGKHQAGPGTLKITEASAERPCVC 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00154 683 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 568 626 IPR017930 -
Pumo1g00154 683 MobiDBLite consensus disorder prediction 98 125 - -
Pumo1g00154 683 SUPERFAMILY Ubiquitin-like 382 461 IPR029071 -
Pumo1g00154 683 MobiDBLite consensus disorder prediction 58 79 - -
Pumo1g00154 683 CDD SANT_TRF 573 623 - -
Pumo1g00154 683 MobiDBLite consensus disorder prediction 348 379 - -
Pumo1g00154 683 MobiDBLite consensus disorder prediction 82 96 - -
Pumo1g00154 683 ProSiteProfiles Myb-like domain profile. 567 622 IPR001005 -
Pumo1g00154 683 MobiDBLite consensus disorder prediction 348 366 - -
Pumo1g00154 683 MobiDBLite consensus disorder prediction 471 495 - -
Pumo1g00154 683 FunFam Telomere repeat-binding protein 1 561 664 - -
Pumo1g00154 683 SMART sant 571 624 IPR001005 -
Pumo1g00154 683 Gene3D - 560 664 - -
Pumo1g00154 683 SUPERFAMILY Homeodomain-like 573 654 IPR009057 -
Pumo1g00154 683 MobiDBLite consensus disorder prediction 58 125 - -
Pumo1g00154 683 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 661 IPR031105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00154 Pumo-Chr1 2563368 2566347 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00154 - - gmx:100814318 1236.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03995 4 80586120 80591846 Pumo1g00154 1 2563368 2566347 ECH
Pumo1g00154 1 2563368 2566347 Pumo1g00154 1 2563368 2566347 ECH