Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01936 ATGGGTCGCCTTCTTCTCTTTCTCATTATTCTCAGCCTTGTCGCATTATCTTTCCTCTCAGAGGTACAATCAGCATCGTTCAAGATTGTGAACAAGTGCCGTCACACGATATGGCCGGGATTACTCTCCGGCGCCACCTCGCCGCCGCTTCCCACCACCGGATTCACCCTCGAGAGCGGCAAATCGAGGACCATAAAAGTCCCGAAGTCTTGGTCGGGTCGGATATGGGCACGGACCCTCTGCGGTCAAGACTATGATGGAAAGTTCTCTTGCGCCACCGCCGACTGCGGCTCCGGCAAAGTAGAGTGCGTCGGCGGCGCCAAACCGCCGGCGACATTGGCGGAGTTCACTCTCAACGGCGCCGACGGCTTGGATTTCTACGACGTGAGTTTGGTCGACGGTTACAACCTTCCGATGCTGATCGTCGCCAAGGACGGCACCAAGGGCGGGTGCAGCGCCACCGGATGCCTCGTCGACCTCAACGGCGGGTGTCCGGCGGAGCTCAGGGTGGCGCGTGCGAACGGCAGCCGCGGGAGCGTGGCGTGCCGGAGCGCGTGCGAGGCATTCGGTGACCCTCGTTTTTGCTGCAGCGAGGCTTACTCGACGCCTGACACGTGTGGTCCTTCTGTTTATTCGCTGTTCTTCAAGCACGCTTGCCCACGCGCGTATAGCTACGCGTATGATGACAAGACCAGCACCTACACGTGTGCCAACGCTAACTATTTGATCATTTTCTGCCCCTGGCCCTATACCAGCCAAAAACTGTTGGGAGCACGTAAAGATGGGGCACAGCTTCCTCTGGTAAATAAAACTATGATGTACTTATCAAGGCTACAATCAGGTGGTTCTTCACCCTCAGCCTCGCTTTCTCACTCTCATTGCTCTCTTTTTTCATATCAAACACAACTCCATATCCAACCTATGGATCTCTTAGCATCCTCATGTTTCACCCTCATTGCTCTCCTACTCCTCACTCCCCCAGGTGTGAAAGGTGCCACCTTTACATTTGTTAACAAATGCGATTACACAGTCTGGCCTGGCATTCTCGCAAATGCCGGTAGCCCACCTCTCGACAGCACCGGTTTCGAGCTCCCCAAGGACACTTCTCGCGCCTTCCAAGCCCCCACCGGCTGGTCCGGTCGATTCTGGGGCAGAACCGGTTGCACTTTCGACGGATCCGGCTCCGGCTCCTGCCTCACCGGCGACTGCGGCTCCGGCCAAGTCGAATGCAACGGCGCCGGAGCCGCCCCACCGGCCACGCTCGCCGAGTTCACGCTCGGCACCGGAGGCCAAGACTTCTACGACGTGAGCCTCGTTGATGGCTACAATCTTCCCATGATCGTGGAAGGCACTGGCGGGTCGGGTCTCTGCGCGTCCACGGGTTGTACTTCGGATCTGAACCAGCAATGTCCTGCGGAGCTGAGAGCCTCGGAGGGAAGCGCGTGCAAGAGCGCGTGTGAGGCTTTTGGGAGCCCCGAGTACTGCTGCAGTGGCGCGTATGGCTCACCCGCCACGTGTAGGCCCTCCATTTACTCCGAGATGTTCAAGGCTGCTTGCCCTAGATCGTATAGCTACGCATACGATGATGCTACCAGCACGTTTACGTGTACCGGCGCGGATTATACCGTTACCTTCTGTCCATCCTCTCCAAGTCAGAAATCTTCACGAGATACCAGCAACCCCATGACCTCAACAACATCACCAGGGTCAGGGACAGTGACAGGAACAGGATCCGAAGGGGCAGTGGTATACTCGGGTGCGGACAACGGCGTTGTGTACAATTCAGTTACGGATTCCGGGTCAAGTTCAGGATCCGGAGGAGAAACAATGCTAGCAGATGGGTCATATTTAGCTGGTTTAGCCATGGGAGACTGCCCTAGAAGAACACTAGTTTCCACCGCGTTTGTCTACTCCGCTAGCTTTTTGCTTATTCTCTTCCTGCTTTAG 1947 0.5655 MGRLLLFLIILSLVALSFLSEVQSASFKIVNKCRHTIWPGLLSGATSPPLPTTGFTLESGKSRTIKVPKSWSGRIWARTLCGQDYDGKFSCATADCGSGKVECVGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLIVAKDGTKGGCSATGCLVDLNGGCPAELRVARANGSRGSVACRSACEAFGDPRFCCSEAYSTPDTCGPSVYSLFFKHACPRAYSYAYDDKTSTYTCANANYLIIFCPWPYTSQKLLGARKDGAQLPLVNKTMMYLSRLQSGGSSPSASLSHSHCSLFSYQTQLHIQPMDLLASSCFTLIALLLLTPPGVKGATFTFVNKCDYTVWPGILANAGSPPLDSTGFELPKDTSRAFQAPTGWSGRFWGRTGCTFDGSGSGSCLTGDCGSGQVECNGAGAAPPATLAEFTLGTGGQDFYDVSLVDGYNLPMIVEGTGGSGLCASTGCTSDLNQQCPAELRASEGSACKSACEAFGSPEYCCSGAYGSPATCRPSIYSEMFKAACPRSYSYAYDDATSTFTCTGADYTVTFCPSSPSQKSSRDTSNPMTSTTSPGSGTVTGTGSEGAVVYSGADNGVVYNSVTDSGSSSGSGGETMLADGSYLAGLAMGDCPRRTLVSTAFVYSASFLLILFLL 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01936 648 ProSitePatterns Thaumatin family signature. 394 410 IPR017949 -
Pumo11g01936 648 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Pumo11g01936 648 FunFam THAUMATIN-LIKE PROTEIN 1 332 547 - -
Pumo11g01936 648 MobiDBLite consensus disorder prediction 548 575 - -
Pumo11g01936 648 ProSiteProfiles Thaumatin family profile. 331 547 IPR001938 -
Pumo11g01936 648 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Pumo11g01936 648 SMART tha2 334 547 IPR001938 -
Pumo11g01936 648 SMART tha2 27 247 IPR001938 -
Pumo11g01936 648 SUPERFAMILY Osmotin, thaumatin-like protein 332 548 IPR037176 -
Pumo11g01936 648 CDD TLP-PA 26 246 - -
Pumo11g01936 648 Pfam Thaumatin family 31 247 IPR001938 -
Pumo11g01936 648 Pfam Thaumatin family 338 547 IPR001938 -
Pumo11g01936 648 CDD TLP-PA 333 546 - -
Pumo11g01936 648 Gene3D Thaumatin 25 247 IPR037176 -
Pumo11g01936 648 Gene3D Thaumatin 332 547 IPR037176 -
Pumo11g01936 648 PANTHER OS03G0233200 PROTEIN 320 547 IPR001938 -
Pumo11g01936 648 SUPERFAMILY Osmotin, thaumatin-like protein 26 247 IPR037176 -
Pumo11g01936 648 FunFam THAUMATIN-LIKE PROTEIN 1 25 247 - -
Pumo11g01936 648 PRINTS Pathogenesis-related protein signature 333 345 IPR001938 -
Pumo11g01936 648 PRINTS Pathogenesis-related protein signature 537 546 IPR001938 -
Pumo11g01936 648 PRINTS Pathogenesis-related protein signature 394 423 IPR001938 -
Pumo11g01936 648 PRINTS Pathogenesis-related protein signature 432 448 IPR001938 -
Pumo11g01936 648 PRINTS Pathogenesis-related protein signature 381 392 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01936 Pumo-Chr11 51200096 51227336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01936 316 559 Receptor kinase-like Gene Family AT5G38280 48.047 1.64e-74 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01936 - - dcr:108222866 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01936 11 51200096 51227336 Pumo11g01936 11 51200096 51227336 ECH
Pumo11g01936 11 51200096 51227336 Pumo4g02220 4 32707983 32710407 ECH