Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01237 ATGAAAGTGGGTTTATCTATCCTTCATTTATTCACGAGCCAGGTAGCAGTTGGGGTTACTGGATTGGACCCCACACCAATGCGACTCAACTCAAAGTTCTCACTTTCCTCTCCCCATGCAATAAAAACCCGCCACGTAAGCCATCGATTTTCACAAAGCAACCGACACCCCTTGATTTACCCACATCCATTAGCACCAATTAACAACCTCAACAACATCAAACACACAATAAATCCCACCATTTACCACACCAAAACCAAAACAAAAACCTTTGTCTCCAACACAAACTCACAAACAGAACATCACAGGCAGTGTCTCTCTCTCTCTCTCTCTGTTCTGTCTGAACACCGAAAATCCGCCATGGATTTTCGCATCTATGGCGTCACGATCCTCCTCTTCCTCCTCCCAACCCTCACATTCTCCCTCTCGCAGGGTCAGATAAACTCAAACTCAATCCTCGTCGCTCTGTTGGACTCGCATTACACCGAAGTCGCTGAGCTAGTGGAAAAAGCCATGCTTTTGCAAACGCTGGAAAACACGGTAATGAACAACAACATCACCATCTTCGCTCCCAGAAACGAAGCCCTCGAACGCAATCTCGACCCCGATTTCAAGCGCTTTCTTCTCGAACCTCGCAATCTTCAATCCCTCCAAACCCTCCTCTTGTCCCACATCGTCCCCAAAAGAATCACAAAACCCGAATATCAATCCGAGTCGGGTATTCCTGGTAACCCGACCCGACACAGAACCCTAGCACCTTACCACCACCTCACTCTCCAGACCCTCAATTTGACCCACTGGAATGTCGACTCTTCCCGGGTTACCCACCCGGATTCGGTGACCCGACCCGACGGAGTCATCCACGGCATCGACACGCTCCTCATCCCTCGCTCCGTCCAAGACGACTTCAACCGCCGCCGGAATCTCATCTCCATCGCCGCCGTGAAGCCCGAAGCCGCGCCGGAGGTCGACCCACGCACCCACCGTCTCAAAAAGCCGGCGCCACCGACGCCGGCAGGTTCCCCGCCGGTGCTCCCGATCTACGACGCAATGGCGCCGGGACCCTCCCTCGCGCCGGCGCCGGCGCCGGGACCGGGTGGACCCCACCACCACTTCAACGGCGAGAGACAAGTAAAAGACTTTATCCACACGCTCCTCCATTACGGCGGTTACAACGAAATGGCGGATATTCTGGTAAACTTAACGTCGCTGGCGACGGAGATGGGACGGTTGGTGTCGGAGGGTTACGTTTTAACGGTGTTGGCTCCTAACGACGAGGCCATGGCGAAGTTAACGACGGACCAGTTGAGTGAACCGGGTTCGCCCGAACAGATTATGTACTATCACTTGATTCCCGAGTATCAGACCGAGGAGAGCATGTACAATGCTGTTAGAAGGTTCGGGAAGGTCCGTTACGACACGTTACGGTTGCCGCATAAGGTGACGGCGCAGGAGGCTGACGGCTCCGTTAAGTTCGGGCACGGGGACGGGTCCGCGTATTTGTTCGACCCGGATATTTACACGGACGGACGGATCTCCGTTCAGGGAATTGACGGCGTTCTGTTTCCGCCTCAGGAGGAAGAGGCTGGGCCCGTTACCCGAGCCCAACCCGCTAAGGTCGTCGTTAAGCAAAGAAGAGGAAAATTGTTGGAAACAGCATGTTGGATGCTTGGAAGCTTTGGACAGAATTCTAGATTCATCTCTTGTCAATAA 1713 0.5347 MKVGLSILHLFTSQVAVGVTGLDPTPMRLNSKFSLSSPHAIKTRHVSHRFSQSNRHPLIYPHPLAPINNLNNIKHTINPTIYHTKTKTKTFVSNTNSQTEHHRQCLSLSLSVLSEHRKSAMDFRIYGVTILLFLLPTLTFSLSQGQINSNSILVALLDSHYTEVAELVEKAMLLQTLENTVMNNNITIFAPRNEALERNLDPDFKRFLLEPRNLQSLQTLLLSHIVPKRITKPEYQSESGIPGNPTRHRTLAPYHHLTLQTLNLTHWNVDSSRVTHPDSVTRPDGVIHGIDTLLIPRSVQDDFNRRRNLISIAAVKPEAAPEVDPRTHRLKKPAPPTPAGSPPVLPIYDAMAPGPSLAPAPAPGPGGPHHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGSPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVTAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPPQEEEAGPVTRAQPAKVVVKQRRGKLLETACWMLGSFGQNSRFISCQ 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01237 570 Gene3D FAS1 domain 374 524 IPR036378 -
Pumo11g01237 570 SMART fasc_3 419 524 IPR000782 -
Pumo11g01237 570 SMART fasc_3 187 297 IPR000782 -
Pumo11g01237 570 FunFam Fasciclin-like arabinogalactan protein 16 373 524 - -
Pumo11g01237 570 SUPERFAMILY FAS1 domain 357 524 IPR036378 -
Pumo11g01237 570 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 138 563 IPR044654 -
Pumo11g01237 570 ProSiteProfiles FAS1/BIgH3 domain profile. 378 506 IPR000782 -
Pumo11g01237 570 ProSiteProfiles FAS1/BIgH3 domain profile. 148 294 IPR000782 -
Pumo11g01237 570 Gene3D FAS1 domain 152 297 IPR036378 -
Pumo11g01237 570 MobiDBLite consensus disorder prediction 318 370 - -
Pumo11g01237 570 Pfam Fasciclin domain 160 296 IPR000782 -
Pumo11g01237 570 Pfam Fasciclin domain 413 523 IPR000782 -
Pumo11g01237 570 SUPERFAMILY FAS1 domain 151 297 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01237 Pumo-Chr11 41854605 41859231 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01237 - - gmx:100790599 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03691 4 76511918 76515557 Pumo11g01237 11 41854605 41859231 PCT