Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00895 ATGATTGTATTTAAGGGTGAATTAGAAGAATCAGTGGTGACCCTTTTGTTGTTGGGGTTGTGGGTAGCTGCTATTTTCATCTCTTTGATTTTTGGGATGAGTAGGAATGATGGTAAGAAACAACAGCACCTTCTTCAAGGAGGTGTTGCTGCTGCTGCTGCTGGTAGTGGTAGTGGTGGCAGAACCAACAGCAACAATAACAGCAATGGCTTTATTCCCTCCTTTCGTACTCTGTCTGGTTACCTGAAGATTGTTTCATCCGGTGCTTCTACTGTTGCTCGGTCTGCGGCTGCCTCTTTTGCATCGTCGATTTTGGATAAGGGTGATAATGCTGACCGTGATCGGGTTATTTGGGCTGGGTTTGACACATTAGAGGGCCAGGGAGAAGTCATTCGGCAAGTACTTCTTCTAGGCTATGGGTCTGGCTTCCAGGTTTGGGATGTTGATGATTCAAATAATGTCCATGACCTAGTTTCCAGACAGGATGGTCCTGTTTCTTTTATGCAAATGGTACCAAGTCCAATTGTATCAAAGAGACCAGAGGACAAGTTTGCAGACAGACGTCCATTGTTGGTAGTTTGTACAGATGGTTTCTTGGCAGGAGGAGGCAAAATACAAGATGGGTTGGTTGCCACTTGCAATGGGGGTGCTTTAAACCGCCATGACCAAGTGAATGGAAACTATCTGCCAACTACTGTTCAATTTTATTCTATGAGGTCCCAATCATATGCTCATGTACTAAAGTTTAGATCAGTTGTTTATTCCGTAAGATGTAGTTCTCGTATAGTTGCCATTTCTCAAGCCACTCAGATACACTGTTTTTCTGCGACAACTTTAGAAAGAGAGTATACTTTACTTACCAATCCTATAGTCACGAGTTGTCTTGGTTCTGGAGGCATTGGCTTTGGCCCACTTGCAGTGGGTCCTAGATGGCTGGCCTATAGTGGAAGCCCAGCTGCAACAGCCACTTCTGGGCGTGTCAGCCCACAGCATTTGACACCTTCTGCAAGCTTTCCTGGTTTTTCTTCAAATGGGGGCTTGGTTGCACACTATGCCAAACAGTCTAGCAAGCATCTTGCTGCTGGGATTGTGACACTTGGAGATATGGGGTATAAGAAACTTTCCAGATACTGCTCAGAACTTCGCCCAGATAGCAGCGGTTCTATACAATCTGTAAATTCTAGCCCAAAAGGAAATGGAATCGTTAATGGCCATTCAACAGATGTGGATAACATTGGGATGGTCATTGTCAGAGATATAGTTAGTAAAAATGTTGTTGCCCAATTCCGGGCCCACAAGAGTCCTATTTCAGCTTTATGCTTTGATCCTAGTGGCACCATATTAGTGACTGCTTCTGTTCAGGGGCATAACATTAATGTTTTTAAGATAATCCCTGGATATGAGAGAGTGTCAGCATCTGATGCTGGCCCTTCTTATGTTCATCTCTACAGGCTGCAACGTGGCTTGACAAATGCAGTTATTCAAGATATCCGTTTTAGTGTTGATAGTAGGTGGATTATGATTAGTTCCTCAAGGGGCACTAGCCATCTATTTGCTATAAATCCTCAAGGAGGACCTGTAAATATTCAGTCATGTGACAATAGTTTAACAGAAAATGGTGGATTGGATGTCATGACTAATCAAGCAGTTCGTTGGCCTCATAGTTCAGCCTTAGAAATTTGTAAACAGCAGAGCCTCTGTGCTACTGGTCCTCCAATCACACTTTCTGTTGTAAGCAGAATTAGGAATGGATCTAATGGCTGGAGAAGCACGGTAACTGGTGCTGCTGTAGCTGCAACAAATAGGATGGGTTCCATTTCTGGGGCTATTGCTTCATCTTTCCGTAACTTTGAAGGCAGCAGTACCTTGTATGTTAACGAGAACTATTCCAAGGAAAAATATCACTTGTTGGTCTTTTCACCCACCAGTTCTATGATACAATATGCTCTGCAGACAATTAACAGTCAAGATTCAGGTGTTGTTTCTGGAGTAACGCCTGCTTATGAATCTGCCCCACTGACTGATGCAAGAGTAGTTGTTGAGCCTATCAAGAAATGGAATATAAATCGGAGACATAGTTGGAGAGAGGGAGAAGATAATATTGACATATATGGAGAGAATGGAGCTTTCATACAATAA 2139 0.4315 MIVFKGELEESVVTLLLLGLWVAAIFISLIFGMSRNDGKKQQHLLQGGVAAAAAGSGSGGRTNSNNNSNGFIPSFRTLSGYLKIVSSGASTVARSAAASFASSILDKGDNADRDRVIWAGFDTLEGQGEVIRQVLLLGYGSGFQVWDVDDSNNVHDLVSRQDGPVSFMQMVPSPIVSKRPEDKFADRRPLLVVCTDGFLAGGGKIQDGLVATCNGGALNRHDQVNGNYLPTTVQFYSMRSQSYAHVLKFRSVVYSVRCSSRIVAISQATQIHCFSATTLEREYTLLTNPIVTSCLGSGGIGFGPLAVGPRWLAYSGSPAATATSGRVSPQHLTPSASFPGFSSNGGLVAHYAKQSSKHLAAGIVTLGDMGYKKLSRYCSELRPDSSGSIQSVNSSPKGNGIVNGHSTDVDNIGMVIVRDIVSKNVVAQFRAHKSPISALCFDPSGTILVTASVQGHNINVFKIIPGYERVSASDAGPSYVHLYRLQRGLTNAVIQDIRFSVDSRWIMISSSRGTSHLFAINPQGGPVNIQSCDNSLTENGGLDVMTNQAVRWPHSSALEICKQQSLCATGPPITLSVVSRIRNGSNGWRSTVTGAAVAATNRMGSISGAIASSFRNFEGSSTLYVNENYSKEKYHLLVFSPTSSMIQYALQTINSQDSGVVSGVTPAYESAPLTDARVVVEPIKKWNINRRHSWREGEDNIDIYGENGAFIQ 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00895 712 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 62 709 IPR045142 GO:0006914
Pumo11g00895 712 Gene3D - 132 520 IPR015943 GO:0005515
Pumo11g00895 712 FunFam Breast carcinoma-amplified sequence 3 341 570 - -
Pumo11g00895 712 SMART WD40_4 422 462 IPR001680 GO:0005515
Pumo11g00895 712 SMART WD40_4 478 519 IPR001680 GO:0005515
Pumo11g00895 712 Pfam Breast carcinoma amplified sequence 3 570 708 IPR022175 -
Pumo11g00895 712 SUPERFAMILY WD40 repeat-like 143 521 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00895 Pumo-Chr11 32888684 32892732 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00895 - - gmx:100778343 1144.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g00895 11 32888684 32892732 Pumo11g00895 11 32888684 32892732 ECH
Pumo4g03232 4 66639435 66645547 Pumo11g00895 11 32888684 32892732 PCT