Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00893 ATGACCGAAATGAAGGAAGGTGGATATGATGCCAAGACATTTGCAATTAAACTAAGAGAAATGGTAACCCTTATGGAACAAAGAACCAGGGAAGCCATAGTCCAAGAATATTTATATCGTCATGTCGCCTCAAGCGGCATACCCAAACAGCTTCACTGCCTTGCCTTGAGGCTGGCCAATGAGCACACCAACAACGCAGCCGCACGCCTTCAGCTACCCTCTGCAGAACTTGTCCCTGCCCTGGTTGACAACAACTACTTTCACTTTGTCCTGGCCTCAGACAATGTGCTTGCCGCCTCTGTGGTTGCAACATCGCTTGTTCGCAACAGTTTGCGCCCTCAGAAGGTTGTTCTGCACATAATTACGGATAGAAAGACTTACTATCCCATGCAGGCTTGGTTCTCCTTGCACTCCTTATCACCTGCCATAATTGAGGTCAAGGCATTGCACCACTTTGATTGGTTTACAAAGGGAAAAGTGCCTGTGCTTGAAGCAATGGAAAAGGATCAAAATGTGCGATCACAGTTTAGAGGGGGGTCATCAGCTATTGTTGCAAATACTACAGAGAAGCCGAAAGTAATTGCTGCAAAGCTGCAAGCACTTAGTCCTAAGTATAATTCAGTAATGAATCACATTCGGATACATCTTCCAGAGTTGTTCTCAAGTCTTAACAAGGTGGTCTTCCTCGATGATGACATTGTGGTACAAACTGATCTTTCACCTCTGTGGGACATTGACATGAATGGAAAAGTCAATGGAGCAGTAGAAACATGCAGTGGAGAAGATAAGTTTGTGATGTCAAAGAGGTTGAAAAGCTATTTGAACTTCTCCCACCCTTTAATATCCCAAAATTTTGATCCCAATGAATGTGCTTGGGCTTATGGCATGAACATTTTTGACCTTGATGCTTGGAGGAAGACCAATATAAGCTCCACATACCATTACTGGGTTGAGCAGAATATAAAATCAGACTTGAGTTTGTGGCAGCTAGGAACACTACCTCCTGGATTAATAGCATTCCATGGTCATGTCCACACTATTGATCCTTTCTGGCACATGTTGGGATTGGGATATCAGGACAATACAAGTTTTGCTGATGCTGAGACTGCCGGTGTCATCCATTTCAATGGCAGGGCAAAGCCATGGCTAGATATAGCTTTCCCTCATCTAAGGCCATTGTGGACTAAGTACATTGACTTTTCAGATTACTTCATAAAGAGCTGTCACATTAGGCCATTGTAA 1242 0.4372 MTEMKEGGYDAKTFAIKLREMVTLMEQRTREAIVQEYLYRHVASSGIPKQLHCLALRLANEHTNNAAARLQLPSAELVPALVDNNYFHFVLASDNVLAASVVATSLVRNSLRPQKVVLHIITDRKTYYPMQAWFSLHSLSPAIIEVKALHHFDWFTKGKVPVLEAMEKDQNVRSQFRGGSSAIVANTTEKPKVIAAKLQALSPKYNSVMNHIRIHLPELFSSLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCSGEDKFVMSKRLKSYLNFSHPLISQNFDPNECAWAYGMNIFDLDAWRKTNISSTYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGHVHTIDPFWHMLGLGYQDNTSFADAETAGVIHFNGRAKPWLDIAFPHLRPLWTKYIDFSDYFIKSCHIRPL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00893 413 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 2 410 IPR029993 GO:0047262
Pumo11g00893 413 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 88 404 IPR029044 -
Pumo11g00893 413 SUPERFAMILY Nucleotide-diphospho-sugar transferases 88 411 IPR029044 -
Pumo11g00893 413 CDD GT8_like_1 87 399 - -
Pumo11g00893 413 Pfam Glycosyl transferase family 8 83 386 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00893 Pumo-Chr11 32876340 32878932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00893 1 411 Glycosyltransferase AT5G54690 83.455 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00893 K20867 - gmx:100777811 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g00893 11 32876340 32878932 Pumo11g00893 11 32876340 32878932 ECH
Pumo4g03233 4 66654724 66657737 Pumo11g00893 11 32876340 32878932 PCT