Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01604 ATGGCTCCACCCGAGTTCTTCATGTGGGGGCTTTGTTCGATATTGATCCTAGTTCATTACCAACTACAAGGTGCCCAAGGGGAAGATTCTGTACCAGGTCTTGGTATCAATTGGGGTGCATTAGCATCCCACCCTTTGAATCCTCACATTGTGGTGAATATGTTGAAGGACAATGGGATCAAGAAGGTAAAACTTTTCGATGCAGATTCTTGGACCGTGAGTGCTATGTCGGGTACAGACATTGAAGTCATGGTCGGAATTCCTAATGATCAATTGAGTAAATTTGCTGGAAGTAGCGGAGATGCAGAAGATTGGGTGAAAGAAAATCTCACCAAACATATTCATAGTCATCATGGCCATGGGAGCGTCAACATCAGATACGTATCTGTTGGAAATGAGCCATTCATGAAAGATTACAAGGGTTCATATGTGAAGACCACATTCCCAGCAATGCAAAATATTCAAAAGGCCATCGATAAGGCTGGTCTTGGAGACACAGTGAAGGTGACTACGGCTTTGAATGCTGATGTTTACGAGTCTCTCTCAGACAAGCCATCAGATGGAGATTTTCGCAGTGACATCAGTGATGCTATAAAACAAATACTGAGTTTCCTTCACGAAAGGAACTCACCATTTCTTGTCAACATATACCCTTTCCTTAGTCTCTACCAAAACAGCAATTTTCCTGAAGAATTTGCATTCTTCGATAGTCAAGGCAGAACAATCCAAGACAAAGATGCACAATATAACAATGTGTATGATGCAAATTTAGACACCCTTGTTTGGTCATTGAAAAAGGCTGGCTACCCTGACATGAGAATTGTGGTTGGTGAAATCGGGTGGCCAACTGATGGCAACAAAAATGCTAACAATTACAATGCAAAAAGGTTCTACCAAGGACTACTCAAGAAGATGGCAAACAAGAAAGGAACTCCTCTTCGCCCTGGAGCCATGGAAATGTATCTATTTTCTCTTTTTGATGAGGACTTGAAGAGCATTGAGCCTGGCAACTTTGAGCGCCATTGGGGAATTTTTCGCTACGATGGAAGGCCTAAGTTTCCTATTGATTTTTCCGGCCAGGGACAGGACAAGTGGCCAGTGGCAGCCAAAGGTGTTGTGTACCAAGAACACAAATGGTGTGTCCTAAGTGGTGATGTTAAGAACCTGAGTTTGGTGCCGAGTGCATTGGACTATGCTTGTGCTGGTGCTGATTGCACAAGCTTAGGATATGGTTGTTCTTGTGAAAATATGGACCTGGCTGGCAATGCTTCGTTTGCTTTCAACCAGTATTTTCAGACAAGGGACCAAAGTGTTGAGGCATGTAATTTCAATGGATTGGCCACTATTGTGGAACAGGATCCATCCAAGGGAAGTTGCTTGTTCCCTATAGAAATTGAGAGCAGCGGTGACATGGTTAGAGCAATGCGTATGATTGGAAGCCTTTTGATTGGATTGGCATTGTTTTTCATAACATTTACGTAG 1482 0.4298 MAPPEFFMWGLCSILILVHYQLQGAQGEDSVPGLGINWGALASHPLNPHIVVNMLKDNGIKKVKLFDADSWTVSAMSGTDIEVMVGIPNDQLSKFAGSSGDAEDWVKENLTKHIHSHHGHGSVNIRYVSVGNEPFMKDYKGSYVKTTFPAMQNIQKAIDKAGLGDTVKVTTALNADVYESLSDKPSDGDFRSDISDAIKQILSFLHERNSPFLVNIYPFLSLYQNSNFPEEFAFFDSQGRTIQDKDAQYNNVYDANLDTLVWSLKKAGYPDMRIVVGEIGWPTDGNKNANNYNAKRFYQGLLKKMANKKGTPLRPGAMEMYLFSLFDEDLKSIEPGNFERHWGIFRYDGRPKFPIDFSGQGQDKWPVAAKGVVYQEHKWCVLSGDVKNLSLVPSALDYACAGADCTSLGYGCSCENMDLAGNASFAFNQYFQTRDQSVEACNFNGLATIVEQDPSKGSCLFPIEIESSGDMVRAMRMIGSLLIGLALFFITFT 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01604 493 Pfam X8 domain 378 448 IPR012946 -
Pumo10g01604 493 Gene3D Glycosidases 33 364 - -
Pumo10g01604 493 ProSitePatterns Glycosyl hydrolases family 17 signature. 272 285 IPR000490 GO:0004553|GO:0005975
Pumo10g01604 493 SMART X8_cls 378 461 IPR012946 -
Pumo10g01604 493 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 19 450 IPR044965 GO:0004553|GO:0005975
Pumo10g01604 493 FunFam Glucan endo-1,3-beta-glucosidase 5 33 363 - -
Pumo10g01604 493 Gene3D - 372 468 - -
Pumo10g01604 493 FunFam Glucan endo-1,3-beta-glucosidase 8 374 470 - -
Pumo10g01604 493 SUPERFAMILY (Trans)glycosidases 34 357 IPR017853 -
Pumo10g01604 493 Pfam Glycosyl hydrolases family 17 34 357 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01604 Pumo-Chr10 21072688 21074587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01604 31 479 Miscellaneous Gene Families AT5G64790 56.347 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01604 - - gmx:100794658 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01604 10 21072688 21074587 Pumo10g01604 10 21072688 21074587 ECH
Pumo9g00713 9 13957076 13960164 Pumo10g01604 10 21072688 21074587 PCT