Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01404 ATGGCTTGTGTGGCACTTCATCCAGTGCGTGAAGAACCTTTTAACACCCGTGGTGAATTTACTGGCTGTTTCAGCCCTCATTTGAGGGACTCAATTTTGATTTACCTAACTGTTGGTGGATCTGTGATTCCTATGCATATTATGAAGACGGATTCAATTGCTTCAGTGAAGCTGAGAATTCAAACCTTCAAGGGATTTTTTGTTAAAAAGCAGAAACTGGTTTTTGAAGGGAAGGAATTGGCTCGTAACAGATCTTGTATCCGTGATTATGGTGTTGGTGATGGGAATGTTTTGCAACTGGTGCTGAGGCTTTCTGATCTCAAAGCTATTACAGTTAGGACTATTTGTGGAAAGGAGTTTGGGCTTTATGTTGAGAAGAGTAGGAATGTGGGTTATGTGAAGCAGCAGATTGCAAAAAAAGGGCAAGGGTTCTTGGATCACAAGGATCAAGAACTGATATGTGAGGGTGAGGCACTTGAAGACCAGAGACTTATTGAGGATATCTGTAAGGACAATGATGCTGTTATTCATTTTTTGGTCAGAATATCAGATGCCAAGGTAAGGACTAAACCAGTTGAGAAGGATTTTGAATTATCAATTGAGGCATCATATGCGCACAATCTGGTGCCAAATTTACGTGCAGACCAGTTAGGGTCAGTCTCTGTAACCGATGAGGTCCTGGAGAGGAACCAATTAACAAGAGATTTTGTTCTGGAACCAATTATTATGAATTCCAATATCAAAATTCCACTAGTGATCCAAGAGCTAATTAAGAGCACTTCGGAGGGATTAGAAAAAGGCTGTAAACCAATTCAATCTTCAGAGGGATCAGGAGGTGCTTATCTCATGCAAGATTCATCTGGCTTGAAGTATGTTTCTGTTTTCAAGCCCATTGATGAGGAGCCAATGGCAATTAATAACCCTCGAGGCCTACCTGTTTCTGAGGATGGTGAAGGGCTAAAGAAAGGTACGCGAGTAGGGCAAGGTGCATTGAGAGAAGTTGCAGCTTACATTTTGGATCATCCTAGGAAAGGACCACGCTCATATCATAACAATGAGAAATGCGGATTTGCTGGAGTTCCTCCTACAGTCATGGTCAAATGCCTGCATAAAGGATTTCATAATAATGAAGATTATCAGAATGATTCAAATAATGTTAAAATAGGATCTCTTCAGATGTTTATGAGGAATATTGGAAGTTGTGAAGACATGGGCCCTAGTGCTTTTCCAGTGGAAGAGGTACACAAGATCTCTGTGCTGGATATCAGGTTGGTAAATGCAGATAGGCATGCAGGGAACATTTTGATTGCCAAGGATGGTGAAGACGGTCGAACTATCCTCATTCCAATTGATCATGGCTATTGCTTGCCTGAGAGCTTTGAAGACTGCACTTTTGACTGGTTATACTGGCCACAAGCTAAGGAGCCTTACTCCTCCGACACCATTGATTACATAAAATCTCTGGATGCTGAAGAAGATATAAAGCTTTTGAAGTTTCATGGATGGGACCTTCCTCCTAAATGTGCCCAGATCCTTCATATATCAACCATGCTTCTTCAGAAAGGTGCAGAGAGAGGACTCACTCCTTTTGCCATAGGAAGCATCATGTGTAGAGAAACACTGAAGAAAAAATCTGTCATTGAGCAGATTGTTGAGGAAGCAGAGGAAGCTGCATTTCCTGGAGCAAGTGAAGCTGCATTTCTTGATCTGGTTTCAGTGATCATGGATAGTCATTTGGATGAGCTATTCCCGTGA 1755 0.4165 MACVALHPVREEPFNTRGEFTGCFSPHLRDSILIYLTVGGSVIPMHIMKTDSIASVKLRIQTFKGFFVKKQKLVFEGKELARNRSCIRDYGVGDGNVLQLVLRLSDLKAITVRTICGKEFGLYVEKSRNVGYVKQQIAKKGQGFLDHKDQELICEGEALEDQRLIEDICKDNDAVIHFLVRISDAKVRTKPVEKDFELSIEASYAHNLVPNLRADQLGSVSVTDEVLERNQLTRDFVLEPIIMNSNIKIPLVIQELIKSTSEGLEKGCKPIQSSEGSGGAYLMQDSSGLKYVSVFKPIDEEPMAINNPRGLPVSEDGEGLKKGTRVGQGALREVAAYILDHPRKGPRSYHNNEKCGFAGVPPTVMVKCLHKGFHNNEDYQNDSNNVKIGSLQMFMRNIGSCEDMGPSAFPVEEVHKISVLDIRLVNADRHAGNILIAKDGEDGRTILIPIDHGYCLPESFEDCTFDWLYWPQAKEPYSSDTIDYIKSLDAEEDIKLLKFHGWDLPPKCAQILHISTMLLQKGAERGLTPFAIGSIMCRETLKKKSVIEQIVEEAEEAAFPGASEAAFLDLVSVIMDSHLDELFP 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01404 584 Gene3D - 29 106 - -
Pumo10g01404 584 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 267 566 IPR000403 -
Pumo10g01404 584 SUPERFAMILY Ubiquitin-like 37 105 IPR029071 -
Pumo10g01404 584 Gene3D - 109 188 - -
Pumo10g01404 584 SUPERFAMILY Ubiquitin-like 105 183 IPR029071 -
Pumo10g01404 584 SUPERFAMILY Protein kinase-like (PK-like) 418 583 IPR011009 -
Pumo10g01404 584 Pfam Ubiquitin family 38 104 IPR000626 GO:0005515
Pumo10g01404 584 Pfam Ubiquitin family 110 181 IPR000626 GO:0005515
Pumo10g01404 584 Pfam Phosphatidylinositol 3- and 4-kinase 276 531 IPR000403 -
Pumo10g01404 584 CDD Ubl_ubiquitin_like 110 177 - -
Pumo10g01404 584 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 41 557 IPR044571 -
Pumo10g01404 584 ProSiteProfiles Ubiquitin domain profile. 30 103 IPR000626 GO:0005515
Pumo10g01404 584 SMART ubq_7 32 103 IPR000626 GO:0005515
Pumo10g01404 584 SMART ubq_7 108 181 IPR000626 GO:0005515
Pumo10g01404 584 ProSiteProfiles Ubiquitin domain profile. 108 185 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01404 Pumo-Chr10 18752186 18756455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01404 1 581 Acyl Lipid Metabolism Gene Families AT5G24240 61.856 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01404 - - gmx:100812724 1101.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00648 7 10642702 10645848 Pumo10g01404 10 18752186 18756455 ECH
Pumo10g01404 10 18752186 18756455 Pumo10g01404 10 18752186 18756455 ECH