Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01160 ATGTTCAGTATGAGTCAGGAGCTTAAAAAAGCTGCCTCTAACGGTCATGAGAAAATGGTAATATCACAAGAACAGCAGGCAAAGATCAATGAGGTGAGAAGGTTGATAGGGCCACTATCAGATAAGGAATCTGTGTACTGTTCTGATGCTTCCATCTCAAGGTATTTAAGGTCGAGAAATTGGAATGTCAAGAAGGCAGCTCAAATGTTGAAACAGAGCCTAAAATGGAGAAAAGAATACAAACCTGAAGAGATTCGCTGGGAAGATGTTGCTGACGAAGCAGAGACAGGGATGATGTATAAACCAAATTATCATGACAAGTATGGGAGATCAGTGCTCGTAATGAGACCTTGTCGCCAGAAGTCAAAGTCAACACAAGGACAGGTTAAGTATTTTGTATACTGCATGGAGCATGCCATTTTCAATCTTCCACCACACCAGGAACAGGTGGTCTGGCTGGTAGATTTCCAGGGTTTCAAGTTGCCAAATATATCATTAAAGGTGGCACGTGAAACTGCCCATATTGTGCAAGAGTATTATCCAAAGCGGCTGGGTTTGGCAATACTGTACAATGCACCTATGATCTTCCAACCATTTTTCTCGATGGTAAAGCCCTTTTTAGAGACTGAGACTTATAATAAAATAAAGTTTGGCTATTCGAACGACCACAACACAAAGAAGATTATGGAGGATTTGTTTGATAAGGATAATCTTGAATCTGCATTTGGTGGGAATGGCGACACAGGAGTTGACATAAATAAAAATGCTGAGACAATGAAAGAGGATGACAATAAGAAACATTCTTTCTGGACACAGGCCAAGTCTATATCATCAGTTGCACACAATGCTCCTTTAGATTCAATCAGGTTAGCTGCAGATTCTGATGCTTCTAACAATGAGAAAATAGACTGTTCCCCTGTTCCTAATTGA 930 0.4032 MFSMSQELKKAASNGHEKMVISQEQQAKINEVRRLIGPLSDKESVYCSDASISRYLRSRNWNVKKAAQMLKQSLKWRKEYKPEEIRWEDVADEAETGMMYKPNYHDKYGRSVLVMRPCRQKSKSTQGQVKYFVYCMEHAIFNLPPHQEQVVWLVDFQGFKLPNISLKVARETAHIVQEYYPKRLGLAILYNAPMIFQPFFSMVKPFLETETYNKIKFGYSNDHNTKKIMEDLFDKDNLESAFGGNGDTGVDINKNAETMKEDDNKKHSFWTQAKSISSVAHNAPLDSIRLAADSDASNNEKIDCSPVPN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01160 309 SMART CRAL_TRIO_N_2 48 73 IPR011074 -
Pumo10g01160 309 SMART sec14_4 93 247 IPR001251 -
Pumo10g01160 309 SUPERFAMILY CRAL/TRIO N-terminal domain 21 89 IPR036273 -
Pumo10g01160 309 Gene3D - 3 282 IPR036865 -
Pumo10g01160 309 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 87 250 IPR001251 -
Pumo10g01160 309 MobiDBLite consensus disorder prediction 1 22 - -
Pumo10g01160 309 Pfam CRAL/TRIO, N-terminal domain 6 71 IPR011074 -
Pumo10g01160 309 PANTHER GH16843P 8 275 - -
Pumo10g01160 309 SUPERFAMILY CRAL/TRIO domain 87 263 IPR036865 -
Pumo10g01160 309 CDD SEC14 104 245 IPR001251 -
Pumo10g01160 309 FunFam Phosphatidylinositol transfer protein 3 8 279 - -
Pumo10g01160 309 Pfam CRAL/TRIO domain 96 244 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01160 Pumo-Chr10 15029580 15033381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01160 51 215 Acyl Lipid Metabolism Gene Families AT5G47730 27.368 2.74e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01160 K26544 - gmx:100777065 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01325 9 38862723 38866456 Pumo10g01160 10 15029580 15033381 PCT