LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g01159	ATGGCCCTCCCCTTGACCTTTGCCACCATTCTTTTCCTCACTCTCCTCACTGCCCAGTCATCTGAGCCACCTTTCGCTTGCGACTGGTCCAACCCCGCCTCCAGATCCTACCCATTCTGCAACCCCAAACTCCCCATTCCCCAAAGAACCAAAGACCTGGTCTCCAGACTCACATTGGACGAGAAACTCTCCCAACTGGTAAACACCGCCCCTCCCATCCCCCGCCTGGGCATCCCCGCCTACGAGTGGTGGAGCGAAGCCCTCCACGGCGTGGGAAGCGTGGGCCGCGGCATCTTCTTCAACGCCACCATCTCCTCCGCAACCAGCTTCCCTCAGGTCATCCTCACCGCAGCCACCTTCGACTCCCACCTCTGGTACCGAATCGGTCACGCCGTTGGAATCGAAGCCAGGGCAATCTACAATGCTGGCCAGGCCAAGGGCCTCACATTCTGGGCCCCCAATATTAACATCTTCAGGGACCCGAGATGGGGCAGAGGCCAAGAGACAGCTGGCGAAGATCCCCTCGTCACTTCTCGCTATGCGGTTTCCTATGTCAGAGGCCTCCAAGGGGATTCCTTCAACGGAGGCAAGTTCAGGGGCCTTCTTCAAGCCTCCGCGTGTTGCAAACATTTCACCGCTTATGATTTGGACAATTGGAAGGGCATCGATCGCTTTGTCTTCGATGCTCGCGTATCTTTGCAAGATTTAGCGGATACATATCAGCCTCCCTTTCAGAGTTGCGTACAGCAAGGGCGAGCCAGTGGGATAATGTGTGCTTACAACCGTGTCAATGGAGTTCCAAACTGTGCGGATTTCAACCTGTTAACCAAAACCGCCAGAAAACAATGGGATTTTCATGGGTATATTACGTCGGATTGTGGAGCAGTGGCGATCATACATGACAAGCAAGGGTATGCAAAATCCGCGGAGGATGCTGTAGCTGATGTTCTTCGGGCTGGGATGGATTTGGAATGTGGTTCTTATTTGACGGATCATGCTAAATCAGCAGTATTGCAGAAAAAAATACCCATGTCTCAAATAGATCGCGCCCTTCACAATCTGTTTTCTATTAGAATGAGGCTAGGCCTGTTTGATGGAAATCCAGCCAGGCTCACATTCGGCTTGATTGGCCCCAATCATGTCTGTTCCAAAGAGCACCAATATCTTGCTCTTGAAGCTGCAAGAAATGGCATTGTCCTCTTAAAAAACTCTCCCACACTTCTCCCACTTCCAAAAACAAGCCCCAGCATTTCCTTAGCAGTGATAGGTCCCAATGCCAATGCTTCTCCGCTAACTCTTCTAGGAAACTATGCTGGCCCTCCTTGCAAATACGTGACAATATTGCAAGGGTTTCAGCACTATGTTAAGAATGCTGTTTATCATCCTGGCTGTGATGGTGGACCAAAGTGTCCTTCGGCTCAAATAGACCAGGCAGTGGAAGTTGCAAAAAAAGTGGATTATGTGCTGCTGGTTATGGGATTGGATCAAAGTGAAGAGAGGGAAGAACGTGATCGCGTTCATCTTGACTTGCCAGGCAAGCAACTTGAACTCATCAACAGCGTTGCTGAAGCTTCTAAGAAACCAGTTATTTTGGTGCTCCTTAGTGGAGGGCCTATAGATATCACTTCAGCCAAGTATAACCACAAAATTGGAGGCATCCTTTGGGCTGGTTATCCAGGGGAACTTGGAGGCATTGCACTTGCACAGATTATCTTTGGTGACCACAACCCAGGAGGAAGACTACCAATTACTTGGTACCCAAAAGACTATATCAAAGTACCAATGACAGACATGAGGATGCGAGCTGATCCTTCAACCGGCTATCCTGGAAGAACTTATCGATTTTACAAGGGTCCAAAGGTGTATGAATTTGGCTATGGACTAAGCTACTCAAAGTATTCCTATGAGTTCGTTTCTGTCACACAAGACAAGCTTCACTTCAACCAATCAACCACTCATTTGATGGTTGAAAATTCAGAAACCATAAGGTACAAACTAGTTTCGGAGTTGGGTGAACAAACCTGCCAAAGCATGTCAGTTTCAGTCACAGTGAGAGTTCAAAATCATGGAAGCATGGTGGGGAAGCATCCTGTATTGCTATTTATGAGGCCTAAAAACCGGACAAGTGGAAGTCCTTTGAAACAGTTGGTGGGTTTCCAGAGTGTGATGCTTGATGCAGGGGAAATGACTCATGTTGGATTTGAGGTAAGCCCTTGTGAGCATCTTAGTAGAGCAAATGAGGCTGGTGCGAAGATAATAGAAGAAGGGTCTCATTTGTTGCTTGTGGATGATCAAGAGCACCCAATAGATATAATTGTTTGA	2322	0.4836	MALPLTFATILFLTLLTAQSSEPPFACDWSNPASRSYPFCNPKLPIPQRTKDLVSRLTLDEKLSQLVNTAPPIPRLGIPAYEWWSEALHGVGSVGRGIFFNATISSATSFPQVILTAATFDSHLWYRIGHAVGIEARAIYNAGQAKGLTFWAPNINIFRDPRWGRGQETAGEDPLVTSRYAVSYVRGLQGDSFNGGKFRGLLQASACCKHFTAYDLDNWKGIDRFVFDARVSLQDLADTYQPPFQSCVQQGRASGIMCAYNRVNGVPNCADFNLLTKTARKQWDFHGYITSDCGAVAIIHDKQGYAKSAEDAVADVLRAGMDLECGSYLTDHAKSAVLQKKIPMSQIDRALHNLFSIRMRLGLFDGNPARLTFGLIGPNHVCSKEHQYLALEAARNGIVLLKNSPTLLPLPKTSPSISLAVIGPNANASPLTLLGNYAGPPCKYVTILQGFQHYVKNAVYHPGCDGGPKCPSAQIDQAVEVAKKVDYVLLVMGLDQSEEREERDRVHLDLPGKQLELINSVAEASKKPVILVLLSGGPIDITSAKYNHKIGGILWAGYPGELGGIALAQIIFGDHNPGGRLPITWYPKDYIKVPMTDMRMRADPSTGYPGRTYRFYKGPKVYEFGYGLSYSKYSYEFVSVTQDKLHFNQSTTHLMVENSETIRYKLVSELGEQTCQSMSVSVTVRVQNHGSMVGKHPVLLFMRPKNRTSGSPLKQLVGFQSVMLDAGEMTHVGFEVSPCEHLSRANEAGAKIIEEGSHLLLVDDQEHPIDIIV	773

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo10g01159	773	FunFam	probable beta-D-xylosidase 7	49	370	-	-
	Pumo10g01159	773	SUPERFAMILY	(Trans)glycosidases	37	396	IPR017853	-
	Pumo10g01159	773	SMART	Fn3_like_2	696	766	IPR026891	-
	Pumo10g01159	773	Pfam	Glycosyl hydrolase family 3 N terminal domain	103	354	IPR001764	GO:0004553\|GO:0005975
	Pumo10g01159	773	FunFam	probable beta-D-xylosidase 2	383	631	-	-
	Pumo10g01159	773	Pfam	Fibronectin type III-like domain	698	764	IPR026891	-
	Pumo10g01159	773	Gene3D	-	49	371	IPR036962	GO:0004553\|GO:0005975
	Pumo10g01159	773	PANTHER	SUGAR HYDROLASE-RELATED	16	769	IPR044993	GO:0009044\|GO:0045493
	Pumo10g01159	773	Gene3D	Immunoglobulins	659	772	IPR013783	-
	Pumo10g01159	773	SUPERFAMILY	Beta-D-glucan exohydrolase, C-terminal domain	398	633	IPR036881	GO:0004553\|GO:0005975
	Pumo10g01159	773	Gene3D	-	383	631	IPR036881	GO:0004553\|GO:0005975
	Pumo10g01159	773	FunFam	probable beta-D-xylosidase 7	664	772	-	-
	Pumo10g01159	773	PRINTS	Glycosyl hydrolase family 3 signature	204	220	IPR001764	GO:0004553\|GO:0005975
	Pumo10g01159	773	PRINTS	Glycosyl hydrolase family 3 signature	278	296	IPR001764	GO:0004553\|GO:0005975
	Pumo10g01159	773	PRINTS	Glycosyl hydrolase family 3 signature	110	129	IPR001764	GO:0004553\|GO:0005975
	Pumo10g01159	773	Pfam	Glycosyl hydrolase family 3 C-terminal domain	398	630	IPR002772	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo10g01159	Pumo-Chr10	14998327	15003772	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo10g01159	19	773	Glycoside Hydrolase	AT1G78060	65.040	0.0	1019

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo10g01159	-		-	aprc:113867121	1414.44

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo10g01159	10	14998327	15003772	Pumo10g01159	10	14998327	15003772	ECH
	Pumo9g01328	9	38904642	38904932	Pumo10g01159	10	14998327	15003772	PCT