Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00093 ATGGCTTTCAACAAACTCCTTGCCACCATTTTGGTGCTTTCTCTCCTCTCCTACTCAACATTCACTCATGCCAATTGCCCACCATCTCCCACTCCAACTCCAAAGCCCACACCACCTACACCTCCCACTCCAAAGCCCACACCCCCCACTCCAAAACCAACACCACCCACTCCAAAGCCCACACCACCAACTCCAAAACCCACACCACCCACTCCAAAGCCTAGTTGTCCTCCTCCTTCTCCTTCTCCTTCTCCTTCACCTCCACCCCAAGCTTCATGCCCCAAGGACACCTTAAAGCTTGGTGTTTGTGCTGACCTCTTAGGACTTGTTAACATTGTTGTTGGAACTCCTCCTTCAAGCCAGTGTTGTGCATTGATTAAAGGTTTGGCCGATTTGGAAGCTGCACTTTGCCTTTGCACTGCAATTAAGGCCAATGTGCTTGGAATCAACTTGAACGTACCTGTCACGCTCAGCGTGATCCTTAGTGCTTGTCAAAAAACTGTCCCTCCTGGTTTCCAATGTCCCTCCTAA 531 0.5009 MAFNKLLATILVLSLLSYSTFTHANCPPSPTPTPKPTPPTPPTPKPTPPTPKPTPPTPKPTPPTPKPTPPTPKPSCPPPSPSPSPSPPPQASCPKDTLKLGVCADLLGLVNIVVGTPPSSQCCALIKGLADLEAALCLCTAIKANVLGINLNVPVTLSVILSACQKTVPPGFQCPS 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00093 176 Gene3D - 87 176 IPR036312 -
Pumo10g00093 176 Pfam Hydrophobic seed protein 93 175 IPR027923 -
Pumo10g00093 176 CDD HPS_like 91 174 IPR027923 -
Pumo10g00093 176 PRINTS Proline rich extensin signature 27 48 - -
Pumo10g00093 176 PRINTS Proline rich extensin signature 49 65 - -
Pumo10g00093 176 PRINTS Proline rich extensin signature 66 83 - -
Pumo10g00093 176 PANTHER - 7 174 - -
Pumo10g00093 176 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 96 175 IPR036312 -
Pumo10g00093 176 FunFam pEARLI1-like lipid transfer protein 1 91 175 - -
Pumo10g00093 176 MobiDBLite consensus disorder prediction 26 93 - -
Pumo10g00093 176 MobiDBLite consensus disorder prediction 27 92 - -
Pumo10g00093 176 SMART aai_6 93 174 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00093 Pumo-Chr10 1613067 1613973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00093 91 175 Acyl Lipid Metabolism Gene Families AT4G22490 41.379 1.36e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00093 - - gsj:114414965 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00093 10 1613067 1613973 Pumo10g00093 10 1613067 1613973 ECH
Pumo9g00624 9 10904612 10905530 Pumo10g00093 10 1613067 1613973 PCT