Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00066 ATGGATAGAAGGGGAATCCAATTATTCGATGACAAAAGAGACGTGTTTTTCTCTGTCAGCAACTTGGGGTTTGAATCTAAAGATGGCTGCTATCAATTCGGAGGTTTGTTTGCCAGTGTTAGTCAAATGGGAATGGGGGTTGGCGTGCAACCCAACGACCCTTCTGACTCGCGAGACAATGGTGGCATGAAACTTCCCTTCAATGAATTGTTCCTCAAGCATGAGGGGAAGGAAGAGGTTGTTGAGGAAGGAGTTCAGGGGGAGAAGAAAAAGGGTGGTGGTGTTTCACTCAAGCTTAAAATCAGGAACCCTTCACTGAGGAGGTTGTTTAGTGGGGCAGTTGCTGGGGCTGTGTCTCGAACTGCTGTGGCGCCTTTGGAGACTATAAGAACTCTCTTGATGGTGGGGAGTAGTAACCATTCCACCACTGAGATGTTCCACAATATTATGAAAACTGATGGCTGGAAGGGATTGTTTAGGGGTAACTTTGTTAATGTCATTCGGGTTGCGCCTAGCAAGGCCATTGAGCTATTTGCTTTTGATACAGTAAACAAGAACCTATCCCCAAAGCCCGGGGAGCAGTCCAAAATCCCAATTCCTGCATCATTGATTGCAGGTGCCTGTGCTGGAGTGAGTTCAACAATATGCACATATCCTCTTGAATTGGTCAAGACTCGACTAACTGTCCAGAGTGATGTTTATCATAGTCTGGTTCATGCATTCGTGAAAATAATTCGAGAAGAGGGTCCTGCTGAACTTTACAGTGGCCTGGCAGCTAGTCTTATCGGAGTTGTCCCGTATGCTGCTACCAATTACTACGCTTACGACACTTTAAAGAAAGCATACAGGAAAATTTTTAAACAAGAGAAGGTTGGCAACATTGAAACCCTTTTGATTGGTTCGTTAGCTGGCGCTTTTTCAAGTAGTGCAACTTTTCCACTTGAGGTGGCTCGCAAGCAGATGCAACTTGGATCTCTCAGTGGAAGGCAGGTTTACAAGAATGTGTTTCATGCCCTTGCATGCATATTTGAACAAGAAGGGATCCAAGGTTTATACAGAGGGTTGGCACCTAGTTGCATGAAGTTGGTACCAGCCGCTGGTATCTCTTTCATGTGCTATGAAGCATGCAAGAGGATATTGCTAGAAAACGAAGAGGAGGATTAG 1164 0.4519 MDRRGIQLFDDKRDVFFSVSNLGFESKDGCYQFGGLFASVSQMGMGVGVQPNDPSDSRDNGGMKLPFNELFLKHEGKEEVVEEGVQGEKKKGGGVSLKLKIRNPSLRRLFSGAVAGAVSRTAVAPLETIRTLLMVGSSNHSTTEMFHNIMKTDGWKGLFRGNFVNVIRVAPSKAIELFAFDTVNKNLSPKPGEQSKIPIPASLIAGACAGVSSTICTYPLELVKTRLTVQSDVYHSLVHAFVKIIREEGPAELYSGLAASLIGVVPYAATNYYAYDTLKKAYRKIFKQEKVGNIETLLIGSLAGAFSSSATFPLEVARKQMQLGSLSGRQVYKNVFHALACIFEQEGIQGLYRGLAPSCMKLVPAAGISFMCYEACKRILLENEEED 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00066 387 ProSiteProfiles Solute carrier (Solcar) repeat profile. 197 281 IPR018108 -
Pumo10g00066 387 Pfam Mitochondrial carrier protein 105 187 IPR018108 -
Pumo10g00066 387 Pfam Mitochondrial carrier protein 196 284 IPR018108 -
Pumo10g00066 387 Pfam Mitochondrial carrier protein 291 383 IPR018108 -
Pumo10g00066 387 Gene3D Mitochondrial carrier domain 101 385 IPR023395 -
Pumo10g00066 387 ProSiteProfiles Solute carrier (Solcar) repeat profile. 291 379 IPR018108 -
Pumo10g00066 387 SUPERFAMILY Mitochondrial carrier 104 375 IPR023395 -
Pumo10g00066 387 PRINTS Mitochondrial carrier protein signature 300 322 IPR002067 GO:0055085
Pumo10g00066 387 PRINTS Mitochondrial carrier protein signature 121 135 IPR002067 GO:0055085
Pumo10g00066 387 PRINTS Mitochondrial carrier protein signature 108 121 IPR002067 GO:0055085
Pumo10g00066 387 PRINTS Mitochondrial carrier protein signature 161 181 IPR002067 GO:0055085
Pumo10g00066 387 PRINTS Mitochondrial carrier protein signature 212 230 IPR002067 GO:0055085
Pumo10g00066 387 PRINTS Mitochondrial carrier protein signature 254 272 IPR002067 GO:0055085
Pumo10g00066 387 PANTHER SOLUTE CARRIER FAMILY 25 103 380 - -
Pumo10g00066 387 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 186 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00066 Pumo-Chr10 1287778 1292304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00066 1 386 Organic Solute Cotransporters AT4G32400 66.327 2.61e-178 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00066 K14684 - gmx:100810035 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00066 10 1287778 1292304 Pumo10g00066 10 1287778 1292304 ECH
Pumo9g00644 9 11900956 11903801 Pumo10g00066 10 1287778 1292304 PCT