Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00278 ATGGTCGCAATGTGTTCTTATCATTCTAAAGATCATTCCAACGTTACAAATGGAGATTCTCGAGAGCACAAGTCTCTTGTTGTCTGCTTTGGAGAAATGCTTATTGATTTTGTTCCAACTGTTGGTGGAGTGTCACTCGCTGAAGCACCGGCCTTTGAAAAAGCTCCTGGTGGTGCTCCTGCTAATGTGGCAGTTGGTATTACAAGACTTGGAGGTACATCTGCCTTTGTAGGGAAGGTCGGGAAGGACGAATTTGGCTACATGTTGGCTGACATTTTGAAGCAAAACAATGTCGAAATTACTGGTATTCGGTATGATTCTGATGCAAGGACTGCTCTGGCTTTTGTTACTCTTAGAGCTGATGGTGAGCGTGAGTTCCTGTTCTTCCGAAATCCAAGTGCTGATATGCTTCTTCAGGAATCAGAACTTGATAAAAGTGTCATATTGAAGGCCAAAGTCTTCCATTATGGTTCCATTAGCTTGATTGCAGAGCCATGCAAATCCGCTCATCTTGCTGCAATGAGGATAGCAAAAAGCTCAGGTTGCATCCTCTCTTATGACCCAAATTTGAGATTGGCATTGTGGTCATCAGCTGAGGCAGCTTGTAAAGCCATTATGAGTATATGGGATCAAGCAGACATTATTAAGGTTAGTGAGGATGAAATAGCATTCTTGACTGGTGGTGATGATCCTTATGATGATAATGTCGTCCTGAAGAAGCTTTTTCATCCTAATCTTAAGCTTTTGATTGTGACAGAAGGCTCAGAGGGCTGCAGATATTTCACAAAGGATTTTAAAGGAAGGGTGGGAGGTGTTAAAGTTAAGCCAGTTGACACAACTGGTGCTGGCGATTCATTTGTCAGTGGAATACTATACAGCATAGCTTCTAATCCAAATCTTCTACAGGTACTGAACTGCAACAAAATCACACTTTCCGGCCATTCCTTTTGCCTCATGTACATGTCACATAGTGATATCTTATTCCTTTTTCTTAGCTTGCCGCTTGATGTTTTTTATTATGACATAAGAACGCCAGCTCTTTCATTTTGCATATTTAATTTTCACCTCTCCTTCGTCCTCACCTGA 1086 0.4162 MVAMCSYHSKDHSNVTNGDSREHKSLVVCFGEMLIDFVPTVGGVSLAEAPAFEKAPGGAPANVAVGITRLGGTSAFVGKVGKDEFGYMLADILKQNNVEITGIRYDSDARTALAFVTLRADGEREFLFFRNPSADMLLQESELDKSVILKAKVFHYGSISLIAEPCKSAHLAAMRIAKSSGCILSYDPNLRLALWSSAEAACKAIMSIWDQADIIKVSEDEIAFLTGGDDPYDDNVVLKKLFHPNLKLLIVTEGSEGCRYFTKDFKGRVGGVKVKPVDTTGAGDSFVSGILYSIASNPNLLQVLNCNKITLSGHSFCLMYMSHSDILFLFLSLPLDVFYYDIRTPALSFCIFNFHLSFVLT* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00278 361 Gene3D - 22 309 IPR029056 -
Pte9g00278 361 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 278 291 IPR002173 GO:0016301
Pte9g00278 361 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 57 81 IPR002173 GO:0016301
Pte9g00278 361 CDD bac_FRK 26 300 - -
Pte9g00278 361 PANTHER HEXOKINASE FAMILY MEMBER 26 302 - -
Pte9g00278 361 Pfam pfkB family carbohydrate kinase 25 300 IPR011611 -
Pte9g00278 361 SUPERFAMILY Ribokinase-like 27 304 IPR029056 -
Pte9g00278 361 PRINTS Ribokinase signature 52 71 IPR002139 GO:0016301
Pte9g00278 361 PRINTS Ribokinase signature 249 260 IPR002139 GO:0016301
Pte9g00278 361 PRINTS Ribokinase signature 207 222 IPR002139 GO:0016301
Pte9g00278 361 FunFam Probable fructokinase-2 24 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00278 Pte-Chr9 3116981 3121006 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00278 K00847 - mof:131146014 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00208 16 2424184 2615913 Pte9g00278 9 3116981 3121006 RCT
Pte9g00278 9 3116981 3121006 Pte9g00278 9 3116981 3121006 RCT