Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00277 ATGGGTTCAACCATTGCAAGTTTCATGTTTATGTGGGCAATGATCCGCCAGTACTGTCCATATGAGTTTCGACGTTTTTTTGAGAAGTATACGCTCAGGTTCACGAACTATTTCTATCCCTACGTTGAGATATCATTTTATGAATATTTGGGAGATCGACTCAAGCGCAGCGAAGCTTATGCTTCTGTGGAAGCATATCTTGGTGCCAACACATCAAAAAGTGCTACGAGACTCAAGGCTGAGCTTGGAAAAGACAGCAGCAACTTGGTTTTGAGTATGGATGAGCATGAGAAAGTGACTGATGAGTTTCAGGGTGTCAAGGTTTGGTGGGCTGCTAACAAGATTGTATCACAAGCCAGGTCCATGAGTTATTATCCTGAACAAGAGAAGAGGTACTACAAACTCACTTTTCATAAGAAGTACAGAGATTTGATCACTGGCCCTTACTTGAAGCATGTTTTCAAGGAGGGGAAGGAGATTAAATTGAGAAACAGGCAAAGGAAGCTTTATACCAACAGCTCTGGGTACAAGTGGCCAACTTACAAGCAGACTATGTGGAGTCACATTGTGTTTGAGCACCCTGCAACTTTTGAAACACTGGCAATGGAGCCTGGGAAGAAGATAGAAATTATTGAAGATCTTGTTACTTTTAGCAAGAGTAAGGATTTCTATGCCAGAATTGGGAAGGCTTGGAAGAGGGGTTATCTTCTTTATGGTCCACCAGGGACGGGGAAGTCAACCATGATTGCAGCAATTGCAAACTTGTTGAACTATGACGTTTATGATCTTGAGCTCACTGCAGTGAAGGACAATACTGAGTTGAAGAAGCTTTTGATAGAGACAACTAGTAAGTCTATTATTGTCATCGAGGACATTGACTGCTCACTTGATCTTACAGGGCAGAGGAAGAAGAAAGCCGAGAAAGTTTCAGATGATGAGTGTGACAAGCTGAACAAGGATGTGGCGAGGAAAGACAGCAAGGATGAGAGCTGCAGCAATGTCACACTTTCAGGGCTCCTGAATTTCATTGATGGGATATGGTCTGCTTGTGGAGGGGAAAGACTCATTGTGTTCACAACAAACTATGTGGAGAAGCTTGATCCAGCTCTCATTAGAAGGGGTAGAATGGACAAGCATATTGATCTTTCTTACTGTTGTTTTGAAGGATTCAAAGTTCTAGCCAGGAATTACTTGGAGATTGAGTCGCATCCAATGTTTGACAAGATCCACGAGCTCATTGAAAAGATTCAGATCACACCAGCTGACGTTGCTGAAAATCTCATGCCCAAGTCCCCTTTCGATGATGCTGGCAAATGTCTTTCAAGAGTGATTGAAGCTCTTGAGGAACTCAAGGATGAACGGGAACTGAAACAGAGGGGCCCAACTGAGGAAGAAGTTGTTCGAGATATAAAGGAAGCCAGGAAACATCATAACTTGGACCAAACTGAGGAAGATCAATGTAGCTCAGTTTTGACAAGTGAAGGAAAATGA 1491 0.4272 MGSTIASFMFMWAMIRQYCPYEFRRFFEKYTLRFTNYFYPYVEISFYEYLGDRLKRSEAYASVEAYLGANTSKSATRLKAELGKDSSNLVLSMDEHEKVTDEFQGVKVWWAANKIVSQARSMSYYPEQEKRYYKLTFHKKYRDLITGPYLKHVFKEGKEIKLRNRQRKLYTNSSGYKWPTYKQTMWSHIVFEHPATFETLAMEPGKKIEIIEDLVTFSKSKDFYARIGKAWKRGYLLYGPPGTGKSTMIAAIANLLNYDVYDLELTAVKDNTELKKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKVSDDECDKLNKDVARKDSKDESCSNVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIDLSYCCFEGFKVLARNYLEIESHPMFDKIHELIEKIQITPADVAENLMPKSPFDDAGKCLSRVIEALEELKDERELKQRGPTEEEVVRDIKEARKHHNLDQTEEDQCSSVLTSEGK* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00277 496 SMART AAA_5 231 386 IPR003593 GO:0016887
Pte3g00277 496 Pfam ATPase family associated with various cellular activities (AAA) 236 383 IPR003959 GO:0005524|GO:0016887
Pte3g00277 496 CDD RecA-like_BCS1 210 380 - -
Pte3g00277 496 Gene3D - 192 379 IPR027417 -
Pte3g00277 496 Pfam Domain associated at C-terminal with AAA 20 112 IPR025753 -
Pte3g00277 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 453 IPR027417 -
Pte3g00277 496 PANTHER BCS1 AAA-TYPE ATPASE 2 452 - -
Pte3g00277 496 FunFam AAA-ATPase ASD, mitochondrial 187 380 - -
Pte3g00277 496 MobiDBLite consensus disorder prediction 473 496 - -
Pte3g00277 496 ProSitePatterns AAA-protein family signature. 354 373 IPR003960 GO:0005524|GO:0016887
Pte3g00277 496 Gene3D - 380 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00277 Pte-Chr3 2338697 2340187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00277 209 410 Miscellaneous Gene Families AT5G58870 27.143 4.61e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00277 - - cave:132176134 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00277 3 2338697 2340187 Pte2g02346 2 43078177 43079661 RCT
Pte3g00277 3 2338697 2340187 Pte3g00277 3 2338697 2340187 RCT