Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02346 ATGAACGAGATGTGGGCTACTATGGGTTCAACCATAGCAAGTTTCATGTTTATGTGGGCAATGATACGCCAGTACTGTCCATATGGGGTTCGACGTTTTTATGACAAGTATACACACAGATTCATGAACTATTTCTATCCCTACGTTGGGATATCGTTTCATGAATACTTGGGAGATCGACTCAAGCGCAGCGAAGCTTATGCTGCTGTGGAAGCATACCTTGGAGGCAACACATCAAAGAGTGCTAAGAGACTCAAGGCTGAGCTTGGAAAAGACAGCAGCAACTTGGTTTTGAGCATGGATGAACATGAGAAAGTGAGTGATGAATTTCAGGGTGTGAAGGTCTGGTGGGCTGCTAACAAGATTGTGTCACAAGCTAGGTCCATGAGTTATCATCCTGAACAAGAGAAGAGGTACTACAAGCTCACTTTTCATAAGAAGTACAGAGAGTTGATCACTGGCCCTTACTTGAAGCATGTTATCAAGGAAGGGAAGGATATTAAAGTGAGAAACAGGCAAAGGAAGCTTTATACTAACAGTCCAGGGTACAAGTGGCCGAGTTACAAGCAGACAATGTGGAGTCACATTGTGTTTGAGCACCCTGCAACCTTTGAAACACTGGCAATGGAGCCTGGTAAGAAAATGGAAATTATTGAAGATCTTATGACTTTCAGCAAGAGTAAGGATTTCTATGCCAGAATAGGGAAGGCTTGGAAGAGGGGTTATCTTCTTTACGGTCCACCAGGGACGGGGAAGTCAACCATGATTGCAGCAATTGCAAACTTGTTGAACTATGACGTTTATGATCTTGAGCTCACAGCAGTGAAGGATAACACTGAGTTGAAGAAGCTTTTGATAGAGACAACAAGTAAGTCTATAATTGTCATTGAGGACATTGACTGCTCACTTGATCTTACTGGTAAGAGGAAGAAGAAAGCCGAGAAAGTATCGGATGATGAGTGTGAGAAGCTGAACAAGGATGTGGCAAGGAAAGAAAGCAAGGATGAGAGTTGCAGCAAAGTCACTCTTTCAGGGCTCCTGAATTTTATTGATGGGATATGGTCTGCTTGCGGAGGGGAGAGACTAATTGTGTTCACAACAAATTATGCGGAGAGACTGGATCCAGCTCTCATTAGAAGGGGTAGGATGGACAAGCATATTGAGCTTTCTTACTGCTCTTATGAAGGATTCAAAGTGTTAGCCAAGAACTACTTGGAGATTGAGTCACATCCAATTTTTGACAAGATCTACAAGCTCATTCAAGAGATTCAAATCACACCAGCTGATGTTGCCGAAAACCTCATGCCGAAGTCCCCTTTTGATGATGCAGGCAAATGTCTTTCGAGATTGATTGAAGCTCTTGAGGAGGTCAGGGAAGCACGGGGACTGAAATGGAGGGGCCCTACGCAGGAAGATGCTGTTCAGTCTCGAGATGAAAAGGAAGCCAAGAAACATCGTAACTTAGCTGACCAAACTGCGGAATAA 1485 0.4364 MNEMWATMGSTIASFMFMWAMIRQYCPYGVRRFYDKYTHRFMNYFYPYVGISFHEYLGDRLKRSEAYAAVEAYLGGNTSKSAKRLKAELGKDSSNLVLSMDEHEKVSDEFQGVKVWWAANKIVSQARSMSYHPEQEKRYYKLTFHKKYRELITGPYLKHVIKEGKDIKVRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETLAMEPGKKMEIIEDLMTFSKSKDFYARIGKAWKRGYLLYGPPGTGKSTMIAAIANLLNYDVYDLELTAVKDNTELKKLLIETTSKSIIVIEDIDCSLDLTGKRKKKAEKVSDDECEKLNKDVARKESKDESCSKVTLSGLLNFIDGIWSACGGERLIVFTTNYAERLDPALIRRGRMDKHIELSYCSYEGFKVLAKNYLEIESHPIFDKIYKLIQEIQITPADVAENLMPKSPFDDAGKCLSRLIEALEEVREARGLKWRGPTQEDAVQSRDEKEAKKHRNLADQTAE* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02346 494 CDD RecA-like_BCS1 217 389 - -
Pte2g02346 494 PANTHER BCS1 AAA-TYPE ATPASE 7 459 - -
Pte2g02346 494 Pfam ATPase family associated with various cellular activities (AAA) 243 390 IPR003959 GO:0005524|GO:0016887
Pte2g02346 494 SMART AAA_5 238 393 IPR003593 GO:0016887
Pte2g02346 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 455 IPR027417 -
Pte2g02346 494 Gene3D - 388 453 - -
Pte2g02346 494 ProSitePatterns AAA-protein family signature. 361 380 IPR003960 GO:0005524|GO:0016887
Pte2g02346 494 MobiDBLite consensus disorder prediction 465 494 - -
Pte2g02346 494 FunFam AAA-ATPase ASD, mitochondrial 194 387 - -
Pte2g02346 494 Pfam Domain associated at C-terminal with AAA 27 119 IPR025753 -
Pte2g02346 494 Gene3D - 194 387 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02346 Pte-Chr2 43078177 43079661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02346 216 416 Miscellaneous Gene Families AT5G58870 28.230 2.42e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02346 - - qsa:O6P43_030941 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00277 3 2338697 2340187 Pte2g02346 2 43078177 43079661 RCT
Pte2g02346 2 43078177 43079661 Pte2g02346 2 43078177 43079661 RCT