Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00438 ATGGACGGTCTAGATTCAAACGAAGAAGGGTTCACGCTTCTTTTGCTTGGTACTGGTCCTTGTTTTCCGGGTTATGCAACCGAACCAATATTATGTAGTACCCAAAAAAAAAAAGGAGCGGAGTCTGGACCCACTTATATAGTGACAGGTACAGTTCAGGTCAATATGGGACTGGGAGGTATAAGTAAGGCAATTGCGTTATCTCTGTTGCTCTCTACGTTGTTGATATCTCTGGTTTCATCTGCATCCAATGATGGGTTGCGTAGGATTGGCCTGAAGAAGATCAAGTTGGATCCAAATGGCCAGCTAGCTGCTCGGCTTGAGTCTAATGGTGGAGATTCTTTTAGAGCTTCCAAAAAGAAGTATTATTTAGGTGGTAATCTGCTAAATGGGGAAGAAACTGATATCGTTGCTTTAAAGAATTACATGGATGCTCAGTACTTTGGTGAAATTGCTATCGGTACCCCACCTCAGAAGTTCACTGTAATATTTGACACGGGAAGCTCAAACCTTTGGGTACCCTCTGTTAAATGTTATCTCTCGGTTGCATGCTATTTCCATGCCAAGTATAGGGCCAGTCAGTCGAGCACCTATGTGAAAAATGGAACATCTGCTGCTATATATTATGGTACCGGAGCTATTGCTGGTTACTTTAGCTATGATAATGTCAAAGTCGGTGACTTGTTGATAAAAAAGCAGGAATTTATTGAAGCAACTAAGGAGCCTGGTATGACATTTTTAATGGCCAAGTTTGATGGCGTATTAGGACTTGGATTTCAAGAAATTTCAGTTGGAAATACTGTTCCAGTGTGGTATAACATGGTCCAACAAGGTCTTGTCAAAGATCCCGTGTTTTCATTTTGGCTCAATCGCAATCCAGAAGAAGAAGAAGGCGGTGAGATAGTTTTTGGTGGTTTGGATCCAAATCACTACAAGGGCAAGCACACTTACGTACCTGTGACTCAGAAAGGATATTGGCAGCAGATTCATTCGATTTTCGCAGTGATTATTGTTGGTACTAATGAAAGCATATTATCAGGATATTGTGCCGATGGATGTTCAGCTATTGCCGATTCTGGTACTTCTTTGTTGGCTGGACCAACGACTATCATTACAATGATAAATCAAGCCATCGGAGCTTCTGGGGTTGTTAGCCTGGAATGCAAGGCTATTGTAGCACAGTATGGACAAACAATCATGAACATGCTCTTGGCTGAGGCACAGCCAAAGAAACTCTGCTCCCAAATTGGGTTGTGCACCTTTGATGGGACTCATGGGGTTAGCATGGGTATCGAGAGCGTGGTGGATCAGCACGACGGGAAATTAGCTGGTTCTTTCGGTGATGCTACATGCTCTGCTTGTGAGATGGCAGTTGTGTGGATGCGAAATCAGCTGATGCAGAATCAGACAGAGGATCAAATTCTGAAATATGTAGATGAGCTTTGTGACAAAGTGCCAAGCCCTTTGGGACAATCGGCTGTTGACTGCGGAAAACTTTCTTCTATGCCGAAGGTTTCGTTCACTATAGGTGGAAAGGCTTTTGATCTTTCTCCGGAGGAGGTATGTTGTCCTTAG 1575 0.4317 MDGLDSNEEGFTLLLLGTGPCFPGYATEPILCSTQKKKGAESGPTYIVTGTVQVNMGLGGISKAIALSLLLSTLLISLVSSASNDGLRRIGLKKIKLDPNGQLAARLESNGGDSFRASKKKYYLGGNLLNGEETDIVALKNYMDAQYFGEIAIGTPPQKFTVIFDTGSSNLWVPSVKCYLSVACYFHAKYRASQSSTYVKNGTSAAIYYGTGAIAGYFSYDNVKVGDLLIKKQEFIEATKEPGMTFLMAKFDGVLGLGFQEISVGNTVPVWYNMVQQGLVKDPVFSFWLNRNPEEEEGGEIVFGGLDPNHYKGKHTYVPVTQKGYWQQIHSIFAVIIVGTNESILSGYCADGCSAIADSGTSLLAGPTTIITMINQAIGASGVVSLECKAIVAQYGQTIMNMLLAEAQPKKLCSQIGLCTFDGTHGVSMGIESVVDQHDGKLAGSFGDATCSACEMAVVWMRNQLMQNQTEDQILKYVDELCDKVPSPLGQSAVDCGKLSSMPKVSFTIGGKAFDLSPEEVCCP* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00438 524 SMART sapb_4 449 523 IPR008139 -
Pte2g00438 524 SMART sapb_4 347 419 IPR008139 -
Pte2g00438 524 Pfam Saposin-like type B, region 1 450 486 IPR007856 GO:0006629
Pte2g00438 524 Pfam Saposin-like type B, region 2 387 419 IPR008138 -
Pte2g00438 524 FunFam Aspartic proteinase A1 88 305 - -
Pte2g00438 524 Gene3D Acid Proteases 88 305 IPR021109 -
Pte2g00438 524 Gene3D Acid Proteases 306 520 IPR021109 -
Pte2g00438 524 FunFam Aspartic proteinase A1 383 486 - -
Pte2g00438 524 Pfam Eukaryotic aspartyl protease 146 521 IPR033121 -
Pte2g00438 524 ProSiteProfiles Saposin B type domain profile. 383 423 IPR008139 -
Pte2g00438 524 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 75 521 IPR001461 GO:0004190|GO:0006508
Pte2g00438 524 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 162 173 IPR001969 GO:0004190|GO:0006508
Pte2g00438 524 Gene3D - 383 486 - -
Pte2g00438 524 ProSiteProfiles Saposin B type domain profile. 447 524 IPR008139 -
Pte2g00438 524 ProSiteProfiles Peptidase family A1 domain profile. 147 524 IPR033121 -
Pte2g00438 524 PRINTS Pepsin (A1) aspartic protease family signature 299 312 IPR001461 GO:0004190|GO:0006508
Pte2g00438 524 PRINTS Pepsin (A1) aspartic protease family signature 153 173 IPR001461 GO:0004190|GO:0006508
Pte2g00438 524 PRINTS Pepsin (A1) aspartic protease family signature 355 366 IPR001461 GO:0004190|GO:0006508
Pte2g00438 524 SUPERFAMILY Acid proteases 68 520 IPR021109 -
Pte2g00438 524 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 355 366 IPR001969 GO:0004190|GO:0006508
Pte2g00438 524 SUPERFAMILY Saposin 385 486 IPR011001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00438 Pte-Chr2 3401424 3405610 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00438 K08245 - qsa:O6P43_011943 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g01131 9 33048137 33056187 Pte2g00438 2 3401424 3405610 RCT
Pte2g00438 2 3401424 3405610 Pte2g00438 2 3401424 3405610 RCT