Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02017 ATGGGAGAGGAAGAGAAGAAACCAGAAGAAAATAAAATGGAGGAGAAGAAACCCGAGGAAGAGGAAAAAGAGCAGAAAGAGGAAGGGAAGGATATTGAAAAGCCAGCTGAAGAGAAGAAAGAAGAGCAAAAAACTGAGGAAGCGAAGGATGGGAAGGAATGCAAAGAAGAAGCTCCTCGGCCACCTCCAGAAATCGTGCTCAAAGTCTTCATGCATTGCGAAGGTTGTGCCCGCAAAGTTCGTAGGTCACTCAAGGGATTTGAAGGGGTGGAAGATGTTATCACAGATTGCAGGAGTCAAAAAGTGATTGTGAAGGGAGTGAAGGCGGATCCTCTGAAGGTTCTGGAGAGAGTACAGAGGAAAAGTCATAGACAGGTTGAGCTTCTCTCTCCGCTACCAAAACCAGCGGCAGAGGAGAAGAAGAAGCCCGAAGAGGAGAAACCAAAGGCAACGGAGAAGAAAGATGAGCCTCCGATTACTCTCGTCACTCTGAAAGTTTACATGCATTGTGAAGCTTGTGCACAGGAAATAAAGAAACGTATAATGAGAATGAAAGGGGTGGAGTCGGCGGAGCCGGATCTAAAGAGCTCAGAGGTGAGGGTGAGAGGAGTGTTTGACCCGGAAAATCTAGTGAAGTACGTGTACAAGCGTACAGGAAAGCATGCGGTTATTGTAAGGGAAGAGACAGAGAAGAAAGAGAAAGCTGAGGAGGGAAAAGAATTCAAAGAAGACAAGAAAGCTGAGGATGGTAGTGACATAAACAAAAAGGGCGGCGGCGGCAAAGGTGGTGGAGGTGACGAAGGCAAGAAGGAAGCTGAATTCAAACCTGATCCTGATAAAGCTGAAGAAACCAAGCTGACGGAGATGAAGCACGAGTATCAATACCCGTATTACTCCACTCGTGTCGGGTATTATTCGTACCCACAACCACAAGTACCGCAACCACATCAGTACTTCCAACCTGAATATTACAATTTTGCCCAATTGCCAAATGCACCTCCGATGTTCAGCGACGAGGACCCAAATGTCTGCTCGATCATGTAA 1044 0.4665 MGEEEKKPEENKMEEKKPEEEEKEQKEEGKDIEKPAEEKKEEQKTEEAKDGKECKEEAPRPPPEIVLKVFMHCEGCARKVRRSLKGFEGVEDVITDCRSQKVIVKGVKADPLKVLERVQRKSHRQVELLSPLPKPAAEEKKKPEEEKPKATEKKDEPPITLVTLKVYMHCEACAQEIKKRIMRMKGVESAEPDLKSSEVRVRGVFDPENLVKYVYKRTGKHAVIVREETEKKEKAEEGKEFKEDKKAEDGSDINKKGGGGKGGGGDEGKKEAEFKPDPDKAEETKLTEMKHEYQYPYYSTRVGYYSYPQPQVPQPHQYFQPEYYNFAQLPNAPPMFSDEDPNVCSIM* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02017 347 SUPERFAMILY HMA, heavy metal-associated domain 159 224 IPR036163 GO:0046872
Pte1g02017 347 CDD HMA 71 127 IPR006121 GO:0046872
Pte1g02017 347 Gene3D - 159 225 - -
Pte1g02017 347 MobiDBLite consensus disorder prediction 124 156 - -
Pte1g02017 347 MobiDBLite consensus disorder prediction 229 255 - -
Pte1g02017 347 MobiDBLite consensus disorder prediction 134 156 - -
Pte1g02017 347 SUPERFAMILY HMA, heavy metal-associated domain 66 121 IPR036163 GO:0046872
Pte1g02017 347 ProSiteProfiles Heavy-metal-associated domain profile. 159 223 IPR006121 GO:0046872
Pte1g02017 347 Pfam Heavy-metal-associated domain 67 120 IPR006121 GO:0046872
Pte1g02017 347 Pfam Heavy-metal-associated domain 164 218 IPR006121 GO:0046872
Pte1g02017 347 MobiDBLite consensus disorder prediction 229 290 - -
Pte1g02017 347 MobiDBLite consensus disorder prediction 1 65 - -
Pte1g02017 347 CDD HMA 163 222 IPR006121 GO:0046872
Pte1g02017 347 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 38 347 IPR044577 GO:0046872
Pte1g02017 347 ProSiteProfiles Heavy-metal-associated domain profile. 62 126 IPR006121 GO:0046872
Pte1g02017 347 Gene3D - 62 134 - -
Pte1g02017 347 MobiDBLite consensus disorder prediction 262 290 - -
Pte1g02017 347 MobiDBLite consensus disorder prediction 1 62 - -
Pte1g02017 347 Coils Coil 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02017 Pte-Chr1 41311248 41313467 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02017 - - csav:115709109 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00151 3 1498188 1500360 Pte1g02017 1 41311248 41313467 RCT
Pte1g02017 1 41311248 41313467 Pte1g02017 1 41311248 41313467 RCT