Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00984 ATGGCTGCGTACCGGGGAGATGATGACTACGATTATCTGTTCAAAGTTGTGTTGATCGGTGACTCTGGTGTTGGAAAATCAAACCTATTGTCAAGGTTCACCCGGAATGAGTTTAGCCTTGAATCCAAGTCCACCATTGGGGTTGAATTTGCTACGAGAAGCGTTCGAGTTGATGATAAGATTGTCAAGGCTCAGATTTGGGACACGGCTGGCCAAGAAAGGTATCGAGCAATTACAAGTGCATATTATCGTGGTGCAGTTGGTGCTTTACTTATATATGACGTTACCCGCCATGTAACATTTGAAAATGTGGAAAGATGGTTGAACGAGCTGAGGGAGCACACTGATGCAAACAGTGTGATAATGTTGCTAGGAAACAAGGCTGATCTTCGTCATCTCCGTGCAGTATCAACTGAGGAAGGTACAGAGTTTTCTGAAAGAGAAAGCTTATATTTCATGGAAACATCTGCCCTCGAGTCCATGAATGTTGAGAATGCCTTCTCAGAAGTATTAACACAAATCTATCGTATTGTAAAGAAGAAAGCCCTTGAAATTGGAGGGGATCCAGCAGGTTTGCCAAAAGGTCAGACAATCCATGTTGGCAAGGATGATGTATCAGACGTGAAAAAAGCTGGATGCTGCTCATCCTAA 651 0.4332 MAAYRGDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSVRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHVTFENVERWLNELREHTDANSVIMLLGNKADLRHLRAVSTEEGTEFSERESLYFMETSALESMNVENAFSEVLTQIYRIVKKKALEIGGDPAGLPKGQTIHVGKDDVSDVKKAGCCSS* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00984 216 PANTHER DRAB11-RELATED 7 201 - -
Pte19g00984 216 SMART rab_sub_5 14 177 - -
Pte19g00984 216 SMART ras_sub_4 11 177 - -
Pte19g00984 216 ProSiteProfiles small GTPase Ras family profile. 2 216 IPR001806 GO:0003924|GO:0005525
Pte19g00984 216 NCBIfam small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Pte19g00984 216 ProSiteProfiles small GTPase Rho family profile. 7 178 - -
Pte19g00984 216 SMART rho_sub_3 16 173 IPR001806 GO:0003924|GO:0005525
Pte19g00984 216 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Pte19g00984 216 ProSiteProfiles small GTPase Rab1 family profile. 9 214 - -
Pte19g00984 216 Gene3D - 7 214 IPR027417 -
Pte19g00984 216 FunFam ras-related protein RABA1f 6 214 - -
Pte19g00984 216 PRINTS Transforming protein P21 ras signature 14 35 - -
Pte19g00984 216 PRINTS Transforming protein P21 ras signature 117 130 - -
Pte19g00984 216 PRINTS Transforming protein P21 ras signature 55 77 - -
Pte19g00984 216 PRINTS Transforming protein P21 ras signature 152 174 - -
Pte19g00984 216 PRINTS Transforming protein P21 ras signature 37 53 - -
Pte19g00984 216 SMART ran_sub_2 19 208 - -
Pte19g00984 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 181 IPR027417 -
Pte19g00984 216 CDD Rab11_like 11 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00984 Pte-Chr19 8726992 8729610 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00984 K07904 - csav:115701168 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g00984 19 8726992 8729610 Pte19g00984 19 8726992 8729610 RCT
Pte19g00984 19 8726992 8729610 Pte2g01926 2 39554211 39556210 RCT
Pte17g00451 17 5890848 5892887 Pte19g00984 19 8726992 8729610 RCT
Pte15g01892 15 24727114 24729524 Pte19g00984 19 8726992 8729610 RCT
Pte2g01926 2 39554211 39556210 Pte19g00984 19 8726992 8729610 RCT