Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01561 ATGGATCGACTTTCCTCAACTACTCTTCTTCCTGAGGCTTTCCGAGGAGATAGGGATGACATCACTACGCAATTTGGATTCATCTGGAACCAAATGAAAGGACCTTTGATCATTCCACTGCTAAGAATATCAGTGTTTCTGTGTTTGGTTATGTCTCTGATGCTATTCTTCGAGAGGGTCTATATGGGTATTGTCATCACTCTGGTAAAGCTGTTTGTCCGGAAACCAGAGAAGCGTTACAAATGGGAGCCAATCAAAGACGATATAGAGCTTGGCAACTCAGCTTATCCTACGGTGCTTGTACAAATTCCTATGTATAATGAAAGAGAAGTTTATCAACTGTCAATTGGAGCTGCATGTGGTCTTTCATGGCCTTCTGACAGGATCATAATACAAGTTCTCGATGACTCAACAGACCCAACAATCAAGGACATGGTTGAGCTAGAATGCCAAAGATGGGCAAGCAAAGGTATAAACATAAAGTACGAGGTGAGGAACAACAGAAACGGGTACAAAGCTGGAGCTCTAAAAGAAGGCATGAAGCATAACTATGTCAAACACTGTGACTACGTTGTCATTTTCGATGCGGATTTTCAACCCGAACCCGACTTTCTCTGGCGAACCATTCCTTTCCTGGTTCACAATCCAGAGCTCGCTCTCGTCCAAGCTCGGTGGAAGTTTGTTAACTCTGATGAATGCTTGATGACCAGAATGCAAGAGATGTCTTTGGATTACCATTTCACTGTGGAACAAGAAGTGGGGTCTTCCACTTATGCATTCTTCGGTTTTAACGGGACTGCTGGAGTATGGAGAATATCTGCTCTAAATGAAGCTGGAGGGTGGAAGGATAGGACCACTGTAGAAGATATGGACCTGGCAGTAAGAGCCAGTCTCAAAGGATGGAAATTTCTCTACTTGGCAGATTTAAAGGTGAAAAATGAGTTGCCCAGTACCTTAAAAGCTTACCGCTATCAGCAACACAGATGGTCTTGTGGCCCTGCCAATCTTTTCCGGAAAATGGTGATGGAAATCATAAGAAACAAGAAAGTATCTCGATGGAAGAAAGTACACGTCATTTACAGTTTCTTCTTTGTTCGAAAGATTATAGCCCACATCAACACTTTCATCTTTTACTGCATTGTGTTGCCTGCCACTGTTTTGGTGCCTGAGGTCGTGGTGCCAAAGTGGGGAGCTGTATATATTCCTTCCATCATCACCCTTCTAAATGCAGTCGGAACACCGAGGTCACTTCACTTGCTGGTATTTTGGATTCTTTTTGAGAATGTTATGTCTCTACACCGAACGAAGGCAACTATCATCGGCCTGTTAGAGGCTAGTCGTGTAAATGAATGGGTAGTGACTGAAAAACTTGGAGATACACTGAAGGCCAAGGCTGCCACTAAAGCACCTAAGAAACCTAGATTCAGGATTGGAGAAAGGCTTCATTTATTAGAGCTTGGAGTTGGACTCTATCTCTTATTTGTTGGCTGCTATGATTTCTTTTTTGGGAACAACCTCTTCTTCATCTTCCTTTTCATCCAAGCAACTGCCTTCTTTATTGTGGGATTGGGTTATGTTGGCACATTTGTTCCTCAATCTTGA 1602 0.4288 MDRLSSTTLLPEAFRGDRDDITTQFGFIWNQMKGPLIIPLLRISVFLCLVMSLMLFFERVYMGIVITLVKLFVRKPEKRYKWEPIKDDIELGNSAYPTVLVQIPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPTIKDMVELECQRWASKGINIKYEVRNNRNGYKAGALKEGMKHNYVKHCDYVVIFDADFQPEPDFLWRTIPFLVHNPELALVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLADLKVKNELPSTLKAYRYQQHRWSCGPANLFRKMVMEIIRNKKVSRWKKVHVIYSFFFVRKIIAHINTFIFYCIVLPATVLVPEVVVPKWGAVYIPSIITLLNAVGTPRSLHLLVFWILFENVMSLHRTKATIIGLLEASRVNEWVVTEKLGDTLKAKAATKAPKKPRFRIGERLHLLELGVGLYLLFVGCYDFFFGNNLFFIFLFIQATAFFIVGLGYVGTFVPQS* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01561 533 FunFam Glucomannan 4-beta-mannosyltransferase 9 88 316 - -
Pte18g01561 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 313 IPR029044 -
Pte18g01561 533 Pfam Glycosyltransferase like family 2 98 332 - -
Pte18g01561 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 377 IPR029044 -
Pte18g01561 533 CDD CESA_CaSu_A2 97 333 - -
Pte18g01561 533 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 20 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01561 Pte-Chr18 27166181 27170819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01561 1 534 Miscellaneous Gene Families AT5G03760 80.000 0.0 918
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01561 K13680 - qsa:O6P43_005875 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01561 18 27166181 27170819 Pte1g01637 1 37973397 37978129 RCT
Pte18g01561 18 27166181 27170819 Pte18g01561 18 27166181 27170819 RCT