Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00272 ATGGCGGTTGATGACGAATGTAAGCTGAAGTTCTTCGAGCTCAAGGCAAAGAGGTCACACCGTTTCATTATTTTCAAGATTCAGGATTACCGAGTGGTTGTGGAGAAAGTAGGAAGCCACGAAGAAACTTACGAAGATTTTACTAACTCTCTGCCTGCTGATGAATGTCGTTATTCTGTCTATGATTTCGATTTCACCACTAATGAGAATTGCCAGAAAAGCAAGATTTTCTTCATTGCATGGTCACCAGATACATCTAAAGTGAGGATGAAGATGGTGTATGCAAGCACTAAGGACAGATTCAAGAGGGAGCTGGATGGAATTCAAGTGGAATTGCAGGCAACAGATCCAAGTGAAATGAGCCTTGACATTGTAAAAGCTCGGGCACTTTAA 393 0.4173 MAVDDECKLKFFELKAKRSHRFIIFKIQDYRVVVEKVGSHEETYEDFTNSLPADECRYSVYDFDFTTNENCQKSKIFFIAWSPDTSKVRMKMVYASTKDRFKRELDGIQVELQATDPSEMSLDIVKARAL* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00272 130 Gene3D Severin 1 130 IPR029006 -
Pte16g00272 130 SMART adf_2 5 130 IPR002108 GO:0003779
Pte16g00272 130 FunFam Actin-depolymerizing factor 2 1 130 - -
Pte16g00272 130 Pfam Cofilin/tropomyosin-type actin-binding protein 7 127 IPR002108 GO:0003779
Pte16g00272 130 PANTHER COFILIN-RELATED 1 129 IPR017904 GO:0015629|GO:0030042
Pte16g00272 130 SUPERFAMILY Actin depolymerizing proteins 1 128 - -
Pte16g00272 130 CDD ADF_cofilin_like 1 129 IPR017904 GO:0015629|GO:0030042
Pte16g00272 130 ProSiteProfiles ADF-H domain profile. 1 130 IPR002108 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00272 Pte-Chr16 3642275 3642807 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00272 K05765 - han:110878215 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00272 16 3642275 3642807 Pte9g00342 9 4045622 4046769 RCT
Pte16g00272 16 3642275 3642807 Pte16g00272 16 3642275 3642807 RCT