Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00223 ATGCCCATGATACTCACTGGCCTACTGCTATATTGTCGTTCAATGATCTCCATGCTCTTCCTTGGTCGCCTGGGTGAGCTGGCTCTAGCTGGAGGCTCCTTGGCAGTAGGCTTTGCTAATATCACCGGTTACTCAATTCTCTCTGGCCTCGCCATGGGAATGGAGCCAATATGTGGTCAAGCTTATGGTGCAAAAAGGCACACCCTTCTTGGTCTATGTTTGCAGAGAACAGTTCTTCTTCTCATCTTTACTTCTCTACCCATCTCCCTCCTGTGGCTACACATGAAGAAAATCCTTCTCCTTTGTGGTCAGAATGAAGCCATAGCCACACAAGCTCAGACCTATCTTCTCTACTCTCTTCCTGATCTCTTCGCACAATCTTTGTTACATCCATTGAGAATTTACCTTAGGACTCAATCTATCACTCTCCCTCTAACACTGTGCGCAGTTTTTTCTATACTTCTTCACCTTCCTATCAGTTACTTTCTTTGTTCACATCTCAGCTTAGGAATCAAAGGGGTTGCAATCAGTGGTGTTTGCACTAACTTCATTCTTGTAGCTTCGTTGACACTGTTTATCGTTGTGTCCGGCATTCACAAGAAAACCTGGGGAGGTTTTTCAATCGAGTGCTTCAGCCAATGGAAGACACTTCTGAACTTGGCCATCCCTAGCTGTGTTTCTGTCTGCCTTGAATGGTGGTGGTATGAGATCATGATTTTGCTATGTGGTTTGTTGTTAAATCCCAAAGCAACTGTTGCTTCCATGGGCATTTTGATCCAAACCACTTCTCTTATCTACATTTTCCCATCATCACTGAGCTTCAGTGTATCAACCAGAGTCGGTAACAAACTAGGTGCAGACAAGCCTGCAAGAGCTAAGCTCTCAGCCATTGTAGGCCTTTCATGGAGCTTTGTGTTAGGACTGTCAGCAATGTGCTTTGCTGTCATGGTGAGGAACAGCTGGGCAAGCATGTTCACCAAAGACAAAGATATCATTGATTTAACATCATTGGTTTTACCGATAATCGGACTTTGCGAACTGGGGAACTGCCCGCAGACAACAGGGTGCGGTGTTCTGAGAGGTACTGCAAGACCAAAACTTGGCGCAAACATCAACTTGGGATGCTTCTACCTGGTGGGGATGCCTGTTGCAGTTTGGTTAGCTTTCTTTGCTGGTTTTGATTTTCAGGGGCTATGGCTTGGGCTGTTGGCTGCACAAGGGTGTTGTGCAGCGACCATGTTGGTGATGATTAGCAGGACTGATTGGGAGCTTGAAACTCAAAGAGCAAAGAAGTTGACTGCAGCAGGAGCAGGAACAGGGGATGATGATGTTTTTTTATCACAGTGA 1347 0.4573 MPMILTGLLLYCRSMISMLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAYGAKRHTLLGLCLQRTVLLLIFTSLPISLLWLHMKKILLLCGQNEAIATQAQTYLLYSLPDLFAQSLLHPLRIYLRTQSITLPLTLCAVFSILLHLPISYFLCSHLSLGIKGVAISGVCTNFILVASLTLFIVVSGIHKKTWGGFSIECFSQWKTLLNLAIPSCVSVCLEWWWYEIMILLCGLLLNPKATVASMGILIQTTSLIYIFPSSLSFSVSTRVGNKLGADKPARAKLSAIVGLSWSFVLGLSAMCFAVMVRNSWASMFTKDKDIIDLTSLVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLAFFAGFDFQGLWLGLLAAQGCCAATMLVMISRTDWELETQRAKKLTAAGAGTGDDDVFLSQ* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00223 448 NCBIfam MATE family efflux transporter 2 399 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pte16g00223 448 CDD MATE_eukaryotic 2 428 IPR045069 GO:0042910|GO:1990961
Pte16g00223 448 Pfam MatE 223 386 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pte16g00223 448 Pfam MatE 2 161 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pte16g00223 448 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00223 Pte-Chr16 2784809 2786155 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00223 K03327 - gmx:100787316 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00223 16 2784809 2786155 Pte9g00294 9 3272650 3273879 RCT
Pte16g00223 16 2784809 2786155 Pte16g00223 16 2784809 2786155 RCT