Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00572 ATGGAGGTTCGACGGAGACCAATGAACGGCGAACCCCAACTGAAAACGCATCATCTTCAGCAGCGTAAGCAGCAGAAGGAGCAGCAGATGGTGAAGTCGGAGACGGAACAGCAGCAGCAGCAGTCGCCCATTCCTCTGTTCACTCTGTACGTTACGAATGGTGTTTTTTTTTGTCTGTTCTTCTCGGTGGCGTACTTCCTTCTTCACAGATGGCGTGACAAGATCCGCACTTCGACTCCTCTTCATATTGTGACGCTTTCTGAGATCGCTGCTATTGTTTCTCTAATTGCTTCTGTCATATACCTTCTGGGTTTCTTCGGCATTGGATTTATTCATCCCATTACCTCTCGGGCTTCGTCTGATGATGAGCTTGAGCTTGAAGATGAGGATGTAAATACTACGCTCATTGCCAAGGAGGATAGCCGTGCTCCTGGCTCTTGCGGTGCTGGTGTGATTGACTGCTCTGTCGTGACAACTGCTCTGCCGCAGACCCAGGTGGTGATTGCTGCACCGGCTGCGGAGTTTGCAATAACGCCAACACAGTTAAACGATGACGATAAGGAGGTCATTAACGCGGTAGTGTCTGGTTCGACGCCGTCGTATTCATTGGAGTCAAAGCTCGGTGATTGCAGAAGAGCTGCAGCAATTAGAAGAGAAGCGGTACAGAGATTGACGGGGAAGTCGCTTGCTGGGTTACCATTGGAGGGGTTCGATTACGATTCGATTTTGGGACAGTGCTGTGAGATGCCAATTGGGTACGTTCAGTTACCGGTTGGCGTGGCAGGACCTCTTTTGCTTGATGGGAGAGAGTACACTGTACCGATGGCTACGACAGAGGGCTGTCTGGTAGCTAGCACAAACAGGGGCTGCAAAGCTATCCACCTCTCTGGTGGAGCTACATCTGTGTTGCTTAGAGATGGGATGACGAGAGCTCCTGTTGTTCGGTTTCCTACTGCCATGAGGGCCGCCCACTTGAAGTTTTTCTTGGAGGATCCGATGAATTTCGATGCACTTTCTGTCGTTTTCAACAGGTCTAGTAGGTTTGCTATGTTACAACGGATCCAGTGTGCTATAGCGGGCAAGAATTTGTACATCAGATTCACTTGCAGCACAGGAGATGCCATGGGGATGAACATGGTTTCTAAGGGAGTCCAGAACGTACTTGATTACATTCAGAACGACTTTCCTGACATGGATATCATCGGTATCTCTGGAAACTTCTGTTCTGACAAGAAGCCAGCTGCAGTGAACTGGATTGAGGGGCGTGGGAAATCGGTCGTATGCGAGGCGATCATTAAGGAGGAGGTAGTTAAGAAAGTGTTGAAGACCAACGTAGCTGCCCTGGTGGAGCTTAACATGCTTAAAAACCTTGCTGGCTCAGCCGTGGCTGGTGCCCTGGGTGGTTTCAATGCACATGCTAGCAATATTGTTTCTGCAATCTACATAGCCACTGGTCAGGATCCTGCTCAGAATGTAGAAAGCTCTCACTGTATCACCATGATGGAAGCTGTGAACGATGGCAGGGACCTTCATGTCTCTGTCTCCATGCCTTCAATTGAGGTGGGCACAGTTGGAGGGGGAACTCAGCTTGCATCCCAGTCTGCTTGTCTTAACCTACTTGGTGTTAAAGGTGCCAGTACAGAAACCCCCGGTGCACATGCAAGGCTATTGGCAACCATTGTAGCTGGTTCAGTCCTAGCTGGAGAGCTTTCCCTCATGTCTGCCCTTGCAGCTGGACAGCTAGTGAAGAGCCACATGAAATACAATCGGTCTAGCAAGGATATGTCCAAGGTTGCCTCCTAA 1803 0.4975 MEVRRRPMNGEPQLKTHHLQQRKQQKEQQMVKSETEQQQQQSPIPLFTLYVTNGVFFCLFFSVAYFLLHRWRDKIRTSTPLHIVTLSEIAAIVSLIASVIYLLGFFGIGFIHPITSRASSDDELELEDEDVNTTLIAKEDSRAPGSCGAGVIDCSVVTTALPQTQVVIAAPAAEFAITPTQLNDDDKEVINAVVSGSTPSYSLESKLGDCRRAAAIRREAVQRLTGKSLAGLPLEGFDYDSILGQCCEMPIGYVQLPVGVAGPLLLDGREYTVPMATTEGCLVASTNRGCKAIHLSGGATSVLLRDGMTRAPVVRFPTAMRAAHLKFFLEDPMNFDALSVVFNRSSRFAMLQRIQCAIAGKNLYIRFTCSTGDAMGMNMVSKGVQNVLDYIQNDFPDMDIIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVAALVELNMLKNLAGSAVAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEAVNDGRDLHVSVSMPSIEVGTVGGGTQLASQSACLNLLGVKGASTETPGAHARLLATIVAGSVLAGELSLMSALAAGQLVKSHMKYNRSSKDMSKVAS* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00572 600 Gene3D - 257 585 IPR023074 GO:0004420
Pte12g00572 600 MobiDBLite consensus disorder prediction 1 37 - -
Pte12g00572 600 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 186 590 IPR002202 GO:0004420|GO:0015936
Pte12g00572 600 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 182 256 - -
Pte12g00572 600 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 307 423 - -
Pte12g00572 600 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 575 588 IPR023076 GO:0004420
Pte12g00572 600 Gene3D - 307 423 IPR009023 -
Pte12g00572 600 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 307 423 IPR009023 -
Pte12g00572 600 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 180 579 IPR009029 GO:0015936|GO:0016616
Pte12g00572 600 Coils Coil 16 36 - -
Pte12g00572 600 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 412 585 - -
Pte12g00572 600 Gene3D - 181 256 IPR023282 GO:0004420
Pte12g00572 600 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 366 380 IPR023076 GO:0004420
Pte12g00572 600 CDD HMG-CoA_reductase_classI 187 590 IPR004554 GO:0004420|GO:0005515|GO:0008299
Pte12g00572 600 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 521 528 IPR023076 GO:0004420
Pte12g00572 600 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 455 481 IPR002202 GO:0004420|GO:0015936
Pte12g00572 600 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 404 429 IPR002202 GO:0004420|GO:0015936
Pte12g00572 600 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 364 382 IPR002202 GO:0004420|GO:0015936
Pte12g00572 600 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 509 530 IPR002202 GO:0004420|GO:0015936
Pte12g00572 600 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 246 267 IPR002202 GO:0004420|GO:0015936
Pte12g00572 600 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 273 293 IPR002202 GO:0004420|GO:0015936
Pte12g00572 600 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 20 594 IPR002202 GO:0004420|GO:0015936
Pte12g00572 600 MobiDBLite consensus disorder prediction 1 30 - -
Pte12g00572 600 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 186 590 IPR004554 GO:0004420|GO:0005515|GO:0008299
Pte12g00572 600 Pfam Hydroxymethylglutaryl-coenzyme A reductase 214 590 IPR002202 GO:0004420|GO:0015936
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00572 Pte-Chr12 5135742 5139634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00572 1 596 Lipid Metabolism Gene Families AT1G76490 67.219 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00572 K00021 - qsa:O6P43_024982 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte14g00800 14 29507339 29512013 Pte12g00572 12 5135742 5139634 RCT
Pte12g00572 12 5135742 5139634 Pte12g00572 12 5135742 5139634 RCT