Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01209 AGAGAGTTGATTTTCTTTCATATATTAGTGTCTTCCTTTCCCTTTGTTGCGCACCAGAAACAACCATTAACACCGACCTCATTCACATTCCCAGCTACCACGCTCTCTGTTTCTCTTTCCTTTTTGTTTTTCCTTTCTCTGTCTCACAAAGTTAAGAAAAAAGGTGCCACGTCACTATCACTGTTTCTTCTCCACCAAATCCAAAAGCAAAGTTTCCAATTTTCCTTCACATCATAAATACACGCACACCCCATTGAGTTCAGATTCTGTTCCCTCTTGTTGGATTTTGTTGAGAGCCTCCATTCTGAGGATTTGATTTCGGAGAGAGATGGGGAATTCATTTGGGTGCTCTGCCTCCGGCGAGAGGTTGGTGTCTGCGGCGAGGGACGGTGATTTGATTGAGGCCAAGATGCTTCTAGAATGCAACCCTTGTCTTGCAAAGTACTCCACTTTTGGCGGTCTCAATTCCCCTCTTCATTTTGCAGCTTCCAAGGGCCATAACGAGATTGTAGCATTGTTGCTTGAAAATGGAGCGGATGTGAATTCCAGAAATTATTGTGGGCAGACTGCTTTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTACAGAACCTTCTGCTCTTTAGATGCAATGTTATGAAAGCTGATTATCTCAGTGGTAGGACAGCTCTTCACTTTGCAGCCATAAATGGGCATGCAAGATGCATTAGGCTTGTCGTGGCTGATTTTGTTCCAAGTGCTCCTATCGAAGCTTTACATGCTCACATAGATGCTGGAGGTGATGGATCAAATGTGAAAAACAAAAATGAACAAAGTGATGACACCAGAGCTGCTAGAGGTTTACACAGCAGTAGCAATTCTGATGGGTTTGCACAACAGGAGAGACATCAGATCTATGGGCTCACCATTCACCACCAGCTGATTCACCCTTTTTCACTTCTGATGCACACACATCCTAATCATTGCAGTGCGCTTTCGAAGTTTGTAAACAAAACAGCTGATGCTGGTATTACTGCCCTTCATATGGCTGCTTTAAATGGGTACTTTGATTGTGTACAACTGCTACTTGATCTTAATGCAAATGTGTCAGCTGCGACATTTCATTATGGAACATCGATGGATTTAATTGGGGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGAGGCAATTTAAAATGCTGTCAGGCAAGAATTTCTTCCAACTTTGATATCCTCCTTGCACGAGGTGCCAGTCGGATGGCTTTGAATTGCAATGGATGGCTTCCGCTTGATGTTGCTAGGATGTGGGGACGTCATTGGCTTGAACCTTTGTTGACACCCACTTCTGATGCCACAATATCATCATTCCCTTCTTCAAATTATTTGTCTTTGCCTCTTATGAGTGTGCTCAACATTGCCAGAGAGTGTGGATTGCAATCAACTACAACCTCTAATGAAGTTGATGTTTGTGCTGTCTGTCTGGAGAGATCATGTTCGGTGGCTGCAGAAGGATGTGGACATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACAAGCAATGTTTTTTCTGAAGCATCTGGACCTCCTGGCTCTATCCCTTGTCCCCTTTGCAGACATGGAATTGTCTCTTTTGTCAAGTTACCAGGTTCCCAAACAAAAGAAAATAAATTGCATATGTCTCTCAGCCTCTGTACCCCATGCATGCTACATCCACGTGACGTAGATCAACCGTCTTTTTCTCATACCCCTGAAATTCGAAGGAACCGTGTAGCTTCTGTTCCATCAGAGATGCTATGCCCCGTCACTTGCACTCCATTTCCATCAGTTGCAATTCCTCTGTGTACTTGCAATGATGGTCCTTGTCCATCATTTGAACCCCGCGAAGCAGAACCACAAGATAATTCGCCACGTCACTCCCAAGCATCCATTATGGATCAGGATAAAATGGAAGGTCCAAGGCTGGAGAAAACAACATGCTCAAACATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCATCAATGCAATTCAGAAATAAATGCTTAACCCAATAGGTTGGTGCATGACCATTCTATTTTGTGGATACTTCATACAATCGTAGATCAAGAAAGGGGCCTATAGTTTTATCTTATTGACCAGCCTCATATGGTGAAATACTGTGGATGCATGTGAGGGCATTTCAGCATCACCACCATTTTAGTTCCCAGTTATCATATTTAGAGAGCACTGGTAAAATTAGAATGAGCTGGTTGTTATCGCAATTGGATTTCGTTTTTATCATAGAAAACCAAGTGTTCTTTCAAAAGGAGATTATGAGAGAACAAGGAAAAATAGCTGTTCTGTTTTGGCTTGTGTCTGATAGGGATTAGAGGGTTCTGTGTAGTATATTTTGTTTGTCATTTATTTTATAGGTTTACATGGAACAACTTTGAGTACAGTAACAGGCACGTTACTATATTTGCATTACCTTTTTCGTGAACTGGACAATGTTTCTCTAATCAAGCATCAACACTAAATGTCATGCTGAAGTACTTGTTCAACAAAGTTGTCCCTGCATTTGTTTCTGTTAAGAA 2565 0.4222 MGNSFGCSASGERLVSAARDGDLIEAKMLLECNPCLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQNLLLFRCNVMKADYLSGRTALHFAAINGHARCIRLVVADFVPSAPIEALHAHIDAGGDGSNVKNKNEQSDDTRAARGLHSSSNSDGFAQQERHQIYGLTIHHQLIHPFSLLMHTHPNHCSALSKFVNKTADAGITALHMAALNGYFDCVQLLLDLNANVSAATFHYGTSMDLIGAGSTPLHYAACGGNLKCCQARISSNFDILLARGASRMALNCNGWLPLDVARMWGRHWLEPLLTPTSDATISSFPSSNYLSLPLMSVLNIARECGLQSTTTSNEVDVCAVCLERSCSVAAEGCGHELCVRCALYLCSTSNVFSEASGPPGSIPCPLCRHGIVSFVKLPGSQTKENKLHMSLSLCTPCMLHPRDVDQPSFSHTPEIRRNRVASVPSEMLCPVTCTPFPSVAIPLCTCNDGPCPSFEPREAEPQDNSPRHSQASIMDQDKMEGPRLEKTTCSNMFWGRRSCSREHQCNSEINA 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01209 569 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Pste9g01209 569 PRINTS Ankyrin repeat signature 243 257 IPR002110 GO:0005515
Pste9g01209 569 PANTHER ANKYRIN REPEAT-CONTAINING 85 321 - -
Pste9g01209 569 SUPERFAMILY RING/U-box 375 432 - -
Pste9g01209 569 SMART ANK_2a 111 141 IPR002110 GO:0005515
Pste9g01209 569 SMART ANK_2a 77 106 IPR002110 GO:0005515
Pste9g01209 569 SMART ANK_2a 44 73 IPR002110 GO:0005515
Pste9g01209 569 SMART ANK_2a 270 299 IPR002110 GO:0005515
Pste9g01209 569 SMART ANK_2a 227 256 IPR002110 GO:0005515
Pste9g01209 569 ProSiteProfiles Ankyrin repeat region circular profile. 227 256 - -
Pste9g01209 569 Gene3D - 203 328 IPR036770 -
Pste9g01209 569 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Pste9g01209 569 MobiDBLite consensus disorder prediction 513 542 - -
Pste9g01209 569 MobiDBLite consensus disorder prediction 152 180 - -
Pste9g01209 569 FunFam E3 ubiquitin-protein ligase XBAT33 6 140 - -
Pste9g01209 569 ProSiteProfiles Ankyrin repeat profile. 270 310 IPR002110 GO:0005515
Pste9g01209 569 SUPERFAMILY Ankyrin repeat 14 332 IPR036770 -
Pste9g01209 569 ProSitePatterns Zinc finger RING-type signature. 391 400 IPR017907 -
Pste9g01209 569 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Pste9g01209 569 ProSiteProfiles Ankyrin repeat profile. 227 259 IPR002110 GO:0005515
Pste9g01209 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 363 447 IPR013083 -
Pste9g01209 569 Pfam Ankyrin repeats (many copies) 46 95 IPR002110 GO:0005515
Pste9g01209 569 Pfam Ankyrin repeat 112 130 IPR002110 GO:0005515
Pste9g01209 569 Pfam Ankyrin repeat 271 309 IPR002110 GO:0005515
Pste9g01209 569 SMART ring_2 376 425 IPR001841 -
Pste9g01209 569 Pfam Ankyrin repeats (many copies) 222 267 IPR002110 GO:0005515
Pste9g01209 569 Gene3D - 4 167 IPR036770 -
Pste9g01209 569 ProSiteProfiles Zinc finger RING-type profile. 376 426 IPR001841 -
Pste9g01209 569 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Pste9g01209 569 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01209 Pste-Chr9 9916442 9923716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01209 17 119 Miscellaneous Gene Families AT5G02620 37.500 6.84e-11 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g01209 9 9916442 9923716 Pste9g01209 9 9916442 9923716 ECH
Pste9g01209 9 9916442 9923716 Pste4g01880 4 13952887 13958067 PCT