Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01880 GAGGAATTATCCTGTTATTATAAGTATGTAACATAAAGTGACGTTATTTATTTTATTAAATAAAGGGGGTTAACCATTTTAATTGGTGATAAAATTGTGTGTCCGTGTCCGTGACCTGAAAATCCGGGAATTATGTGTTGAGTTGAATAATCGAAAAAGAGCGTAGTAGATATGTGTTGATTTGTGAATTCTGATTTGGGTGTTGAGAGTTGAGAGTTGAGAGTTGAGAGTTGAGAGAAAAGAAAAGCAAGAAGACAAGACAAGTGGTAACAAGTTGGTTGAAGCTGACACGTCAAAACGTTGCGTGGTGAGAGAGATGGGGAATTCGTTCGGGTGTTCGGCCTCCGGCGAGAGGCTGGTGTCGGCGGCGAGAGACGGCGACTTGGTGGAGGCGAAGATGCTTCTCAACTGTAACCCCTGTCTCGCCAAGTATTCTACCTTCGGTGGCCTCAATTCCCCTCTCCATTTTGCCGCTGCCAAAGGACATAACGAGATTGTAGCATTGTTGCTGGAAAATGGAGCTGATGTGAATTCCAGAAATTATTGTGGCCAGACGGCCTTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTACAGACACTTCTACTCTTCAAATGCAATGTTGTGAGAGCTGATTATCTTAGTGGGAGAACAGCTCTTCATTTTGCAGCTGTGCATGGTCATGTGAGATGTATTAGACTTATTGTTGCTGACTTTGTACCAAGTGCTCCTTATCAAGCTATACATGCTTGTACAGATGTTGACAAGGGTGGTGGATCAAATGTGAAAGGCAAACATGAGCAAAGTGCCTTGTCCAAATTTATAAATAAGTCCGCTGATGGTGGCATCACTACCCTTCATATGGCTGCATTGAATGGTTACTTTGATTGTGTACAACTGTTGCTTGATCTTAATGCAAATGTGTCTGCTGTGACATTTCATTATGGAACATCAATGGATTTAATAGGGGCTGGAAGTACTCCTTTGCATTATGCAGCTTGTGGAGGCAATTTAAAATGCTGCCAGGCAAGAAATGCTTTAGTTTTGATTGTGATATACCTAATGGTACTTTCCTTTAAAACTCAAAATATTGTTATTCTTTTTCAGATCCTTGTTGCACGAGGTGCAAGTCGCATGGCTTTAAATTGCAATGGGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACAGTTGCTGGCACCCAGTTCTGATACCACAATACCTACATTTTCTCATTCAAATTACTTATCCTTGCCTCTTATGAGTGTGCTCAACATAGCTAGAGAGTATGGATTGCAATCATCTACAACCTCCTCTGATGAGATTGACTTTTGTGCTGTATGCCTGGAGAGGCCATGTTCAGTGGCTGCAGAAGGATGTGGGCATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACAAATAATGTTTCTTCTGAAATGCTTGGCCCTCCTGGCTCTATCCCTTGCCCCCTTTGTAGACATGGAATTGTCGCGTTTGTGAAGTTACCAGGTTCCCAAGCAAGAGAAAATAAATTACACGTGTCTCTTGGCTTGTGTACCCCATGTATGCTACATCCACGTGACTCAGAGCAGCCATCCCTTTCTCATACACCAGAGATTGGAAGAAATCATTTAGCTTCTGTTTCTTCAGAGATACTCTGCCCTGTCACTTGTAGTCCGTTCCCATCTATGGCAATCCCCCTGTGTACCTGCAATGATGGTCCATGTCCATCATTGGAACCCCGAGAAGTAGAAACACAGGACGGATCACCTCATCACTCTCAAGCATCAACAATGGATCAGGATAAAATTGAAGGACCGAGACTGGATAAAACAACCTGTTCTAGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCACCAATGCAATTCAGAAATAAATGCTTGACTCGTATGGTGCTTGTATGACCCATTCTTGTGTTGTGGATACTTTGGTACACTTGGATCCACACAGCAGTCCTCAGTTGCCTTATTAACTAGCCTCAGTTAGTGGAACTCGGGACATCTCTAGAAGAGTGTGCACATCTGCTTGGCTGCACAGGCTGTATGCTAAGTGATAGATACACAATTCTGGCGTTTCAGTAACAGAACCACCCTCTGGATATGCCCTTTTCTGATATTTAGAGAGCGTGCGTGAAATTAGTTTCGGTTTCTTAAGATTGTCATTGTGATTTATTGTAATTGGATTTCATTTTATCAAAAGAAAAAATGTCCTTTTAGGGGTAAAAAATACCTTATGCTTTTCATAGCATGTGTATGACATTAGGAGCATCTGTATATTATGCTTGTTACTACTACAAAGCACAAATGCAGGCACTGAAACACAGTGA 2378 0.4235 MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFKCNVVRADYLSGRTALHFAAVHGHVRCIRLIVADFVPSAPYQAIHACTDVDKGGGSNVKGKHEQSALSKFINKSADGGITTLHMAALNGYFDCVQLLLDLNANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQARNALVLIVIYLMVLSFKTQNIVILFQILVARGASRMALNCNGWLPLDIARMWGRHWLEQLLAPSSDTTIPTFSHSNYLSLPLMSVLNIAREYGLQSSTTSSDEIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTNNVSSEMLGPPGSIPCPLCRHGIVAFVKLPGSQARENKLHVSLGLCTPCMLHPRDSEQPSLSHTPEIGRNHLASVSSEILCPVTCSPFPSMAIPLCTCNDGPCPSLEPREVETQDGSPHHSQASTMDQDKIEGPRLDKTTCSSMFWGRRSCSREHQCNSEINA 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01880 539 FunFam E3 ubiquitin-protein ligase XBAT33 6 140 - -
Pste4g01880 539 SMART ANK_2a 111 141 IPR002110 GO:0005515
Pste4g01880 539 SMART ANK_2a 77 106 IPR002110 GO:0005515
Pste4g01880 539 SMART ANK_2a 44 73 IPR002110 GO:0005515
Pste4g01880 539 SMART ANK_2a 220 250 IPR002110 GO:0005515
Pste4g01880 539 SMART ANK_2a 177 206 IPR002110 GO:0005515
Pste4g01880 539 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Pste4g01880 539 SUPERFAMILY Ankyrin repeat 14 301 IPR036770 -
Pste4g01880 539 ProSiteProfiles Zinc finger RING-type profile. 346 396 IPR001841 -
Pste4g01880 539 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Pste4g01880 539 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Pste4g01880 539 Gene3D - 148 302 IPR036770 -
Pste4g01880 539 ProSitePatterns Zinc finger RING-type signature. 361 370 IPR017907 -
Pste4g01880 539 Gene3D - 8 147 IPR036770 -
Pste4g01880 539 PANTHER ANKYRIN DOMAIN-CONTAINING 15 145 - -
Pste4g01880 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 329 413 IPR013083 -
Pste4g01880 539 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Pste4g01880 539 Pfam Ankyrin repeats (many copies) 112 198 IPR002110 GO:0005515
Pste4g01880 539 PRINTS Ankyrin repeat signature 193 207 IPR002110 GO:0005515
Pste4g01880 539 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Pste4g01880 539 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Pste4g01880 539 MobiDBLite consensus disorder prediction 483 512 - -
Pste4g01880 539 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Pste4g01880 539 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Pste4g01880 539 SUPERFAMILY RING/U-box 340 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01880 Pste-Chr4 13952887 13958067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01880 10 216 Miscellaneous Gene Families AT1G07710 32.127 3.17e-12 67.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01880 4 13952887 13958067 Pste4g01880 4 13952887 13958067 ECH
Pste9g01209 9 9916442 9923716 Pste4g01880 4 13952887 13958067 PCT