Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00990 AGGTAATTTGCAATGGCTGAACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCATGAGATATCTGAAAATGATTTGCTTCAACTATTTCAGCCCTTTGGAGTCATAACGAAGCTTGTGATGTTGCGTGCCAAAAATCAGGCTCTTCTTCAAATGCAAGATATTCCTTCTGCAGTTAATGCTTTACAATTTTATGCCAATGTTCAGCCAAGCATTAGGGGGAGAAATGTTTATGTCCAATTTTCCTCACATCAAGAACTAACTACAATGGATCAAAATCAAGCACGAGAAGATGAGCCAAATCGAATTCTCTTAGTTACAGTTCATCACATGCTGTATCCTATAACAGCAGCTGTGCTACACCAAGTGTTTTCTCCCCATGGATTTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTATCAGTCCCGTCAAAGTGCTGTTACTGCCAGAAGTACACTTCAGGGACGCAATATTTATGATGGTTGTTGTCAGCTGGACATTCAGTTCTCCAAACTTATCTTATGCTTCTATGCTGCTGATCAATCTTTTGTATCAACCATCTATCTGTCTTTGGCTTTTATTTATTTTTTTTCGTTGGGCATAATTCTTGTTGATTCCAGCCTTGATGAACTCCAAGTGAACTACAATAATGATCGTTCAAGGGACTACACAAACCCAAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACAACCTGGATATGGCGATGCAGGAGGCATGTATTCTGGAGCCAGGACAGGCGGATTCTCACAGATGGCCAATGCTGCAGCAATTGCTGCTGCCTTTGGGGGAGGTTTGCCTCCTGGCATAACTGGAACAAATGAAAGATGCACAGTTCTTGTTGCAAATCTCAATCCTGATAGAATAGATGAGGATAAATTATTCAACTTGTTCTCCATTTATGGGAACATCATCAGAATTAAACTTCTCCGAAATAAGCCAGATCATGCACTTATTCAGATGGGTGATGGTTTCCAAGCTGAATTAGCAGTACACTTTCTGAAGGGAGCCATGTTGTTTGGAAAGCGGTTGGAAGTGAACTATTCAAAGCATCCAAACATAACCCAAGGTGCTGATACACATGAGTATGTCAATTCAAATCTCAACCGATTCAATCGCAATGCTGCTAAGAACTACCGGTATTGCTGCTCACCAACAAAGATGATCCACTTGTCCACCCTCCCGCAAGACATAACCGAAGAGGAGATTGTAAGCCTTTTAGAGGAGCATGGAGTCATTGTCAATAGTAAGGTCTTTGAGATGAATGGAAAAAAACAGGCTCTTGTTCAGTTTGAAACTGAGGAGCAGGCTACAGATGCCCTTGTGTGCAAGCATGCAAGTCCACTTTCTGGATCCGTTGTCCGCATCTCCTTTTCCCAGTTGCAGAATATATAAGACTTTGATAAGGCCTGAAGGGAAACAGTTTTATGGTTGCTACTTGCTAAGCGTATTAGAGACGAGGAATTCTCAATTTGGGAAGGATATTTTTATGCAGATAATGTCACCTTCATTGTCATTGTAATGGTCTCTTTGCTTGCTAATTTACTGATTAAACCTGCACTATTTTTTCTCTTTTAATCATTTGTCTTCTCATCTCCATCGCCTCTATTAGATGTTTAGGTTACTAACATAATGTTGTGGGGCAAGCTTTATTATTGCAGATGGAAGTAGTCTTGAAGAATAGAAAAGGGGGAGGGAAGTTATTACCTTCTCAGAATTGAGGGATTGCCTTATGGTTTTTATAATGATTGTTGTATATGTTCTGTAATTCAGGCTAAGTAGGCCTTTCTGTTGTATTCTCAATCCATTTCAATTTTCTTGTCCAACCAAGTAAAAAGTTACATTTTTGTTTTTGCTTTATTTATTCCCATTTGTACTTTGTTGCAG 1932 0.4006 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDIPSAVNALQFYANVQPSIRGRNVYVQFSSHQELTTMDQNQAREDEPNRILLVTVHHMLYPITAAVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVTARSTLQGRNIYDGCCQLDIQFSKLILCFYAADQSFVSTIYLSLAFIYFFSLGIILVDSSLDELQVNYNNDRSRDYTNPNLPTEQKGRSSQPGYGDAGGMYSGARTGGFSQMANAAAIAAAFGGGLPPGITGTNERCTVLVANLNPDRIDEDKLFNLFSIYGNIIRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFGKRLEVNYSKHPNITQGADTHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEEIVSLLEEHGVIVNSKVFEMNGKKQALVQFETEEQATDALVCKHASPLSGSVVRISFSQLQNI 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00990 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 373 - -
Pste9g00990 475 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 3 453 - -
Pste9g00990 475 CDD RRM3_PTBPH3 287 362 IPR034797 -
Pste9g00990 475 SUPERFAMILY RNA-binding domain, RBD 3 90 IPR035979 GO:0003676
Pste9g00990 475 MobiDBLite consensus disorder prediction 223 245 - -
Pste9g00990 475 SUPERFAMILY RNA-binding domain, RBD 287 471 IPR035979 GO:0003676
Pste9g00990 475 SMART rrm1_1 7 76 IPR000504 GO:0003723
Pste9g00990 475 SMART rrm1_1 399 468 IPR000504 GO:0003723
Pste9g00990 475 SMART rrm1_1 289 358 IPR000504 GO:0003723
Pste9g00990 475 SMART rrm1_1 101 170 IPR000504 GO:0003723
Pste9g00990 475 CDD RRM1_PTBPH3 6 80 IPR034795 -
Pste9g00990 475 Gene3D - 98 185 IPR012677 -
Pste9g00990 475 SUPERFAMILY RNA-binding domain, RBD 95 176 IPR035979 GO:0003676
Pste9g00990 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 403 464 IPR000504 GO:0003723
Pste9g00990 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Pste9g00990 475 Pfam RRM-like domain 97 175 IPR021790 -
Pste9g00990 475 MobiDBLite consensus disorder prediction 223 241 - -
Pste9g00990 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 398 472 IPR000504 GO:0003723
Pste9g00990 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Pste9g00990 475 Gene3D - 285 380 IPR012677 -
Pste9g00990 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 362 IPR000504 GO:0003723
Pste9g00990 475 Gene3D - 381 475 IPR012677 -
Pste9g00990 475 Gene3D - 1 97 IPR012677 -
Pste9g00990 475 CDD RRM4_PTBPH3 391 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00990 Pste-Chr9 6409976 6419413 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g00990 9 6409976 6419413 Pste9g00990 9 6409976 6419413 ECH
Pste9g00990 9 6409976 6419413 Pste4g02574 4 18197985 18208119 PCT