Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02574 AAGTTTTGGTAGTGTGATGAGAAGAAAAAGCATTTGCAAAAACTTCACACTTGGAGTTTCAAGTGTTGGAACTTGAAATTCAATCTAAGGCAAGTTCTCTCTCTACATGCTTCTCCGATTTTAACAAAGGAACCTGCTCCAACTTTAGGGTTCTGAGCTGTAATTCGGACCTTCCCTTTTTGTTCACTGCTTTTTGTTCCTTGATTCACTTCTCCAATTGGAATGATTTACTTCAGCTGTTTCAGCCTTTTGGAGTCATAACAAAGCTTGTTATGCTGCGTGCAAAAAATCAGGCTCTTCTCCAAATGCAAGATGTTCCTTCTGCAGTTAATGCTTTACAATTTTATGCAAATATTCAGCCAAGCATAAGGGGGAGGAATGTTTATGTTCAATTTTCCTCACATCAGGAATTAACAACAATGGATCAAAGTCAAGGACGAGGAGATGAGCCAAACCGAATTCTCTTAGTTACAATCCATCACATGCTGTATCCTATAACAGTGGATGTGCTGTATCAAGTATTTTCTCCCCATGGATCTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGCTTTCAGGCTCTTATTCAGTACCAATCACGTCAGAGTGCTGTTATGGCTAGAAGTACACTTCAGGGACGCAATATTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAGTTACAAGTGAACTACAATAATGAACGTTCAAGCCTGGATATGGTGATGCAGGAAACATGTATGCTGCTCAGGGTTCTGGAGCCAGTGCAGATGTCAAATGCTGCAGCCATTTCAGCTGCCTTTGGAGGAGGTCTGCCTCCTGGAATAACTGGGACAAATGACAGGTGTACAGTTCTTGTATCTAATCTTAATCCCGATAGAATTGATGAGGACAAACTATTCAACTTGTTCTCTATTTATGGGAATATTTTGAGAATTAAACTTCTCCGAAATAAACCAGATCATGCACTTATCCAGATGGGAGATGGTTTTCAAGCTGAATTGGCTGTACACTTTCTGAAGGGGGCTATGTTGTTTGAGAAACGATTAGAGGTCAACTTCTCCAAGCATCCAAACATAACCCAAGGTGCTGACACACATGAATACATCAGTTCCAATCTCAATCGTTTCAACCGCAATGCAGCCAAAAACTACCGGTATTGCTGCTCGCCAACAAAGATGATCCATTTGTCCACACTCCCACAAGACATCACTGAAGAGGATATTGTGAACCTTGTAGAGGAGCATGGAATCATTGTCAACTGCAAAGTCTTCGAGATGAATGGGAAAAAACAGGCTTTGGTTCAGTTTGAGAATGAGGAGCAGGCTACTGAAGCCCTAGTGTGCAAGCATGCAAGCACACTTTCTGGCTCAGTAATCCGTATCTCCTTTTCGCAGTTACAGAATATATGAGTCTTTGTTAAGGAGTTGCAGACAACCGGATCAGAGGTTGTTGAGCACAATAGGGACAAGGATCTGAATTTGGGAAGGATATTTTTTATGCAGATGATGGGCATCTTCATTATCTTGTAATGGTCACTTTGCTTTCTAACTGATTTACTCATAATATCTACTCTTTCATTTTTCACCTTTAATCATTTATCTTCTCATCTCCATTGCTCTGCTAGTTATTTTTAGGCTGCTGCTAACATAATGTAGTGGGGAGGTGTACATTTTGTGATTGAGATAAGGTTCTTGGGTAATACAGAGGGGGATTCACTATCTTGCCTTTTCTAGGCTGCTGCTAACATAATGTAGTGGGGAGGTGTACATTTTTAAATCATTGTTGTATATGTTTTGTAATTCAGGCTAAAGTAGTAATAGGCCTTTTTTCTTTCTTAATCCATATCAAAATTTTCTATTTTCC 1884 0.3992 MLRAKNQALLQMQDVPSAVNALQFYANIQPSIRGRNVYVQFSSHQELTTMDQSQGRGDEPNRILLVTIHHMLYPITVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVMARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSSLDMVMQETCMLLRVLEPVQMSNAAAISAAFGGGLPPGITGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNILRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFEKRLEVNFSKHPNITQGADTHEYISSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEDIVNLVEEHGIIVNCKVFEMNGKKQALVQFENEEQATEALVCKHASTLSGSVIRISFSQLQNI 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02574 385 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 282 - -
Pste4g02574 385 SMART rrm1_1 65 134 IPR000504 GO:0003723
Pste4g02574 385 SMART rrm1_1 309 378 IPR000504 GO:0003723
Pste4g02574 385 SMART rrm1_1 199 268 IPR000504 GO:0003723
Pste4g02574 385 Gene3D - 62 155 IPR012677 -
Pste4g02574 385 SUPERFAMILY RNA-binding domain, RBD 60 151 IPR035979 GO:0003676
Pste4g02574 385 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 272 IPR000504 GO:0003723
Pste4g02574 385 CDD RRM4_PTBPH3 301 379 - -
Pste4g02574 385 Coils Coil 140 160 - -
Pste4g02574 385 Gene3D - 1 61 IPR012677 -
Pste4g02574 385 Gene3D - 291 385 IPR012677 -
Pste4g02574 385 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 382 IPR000504 GO:0003723
Pste4g02574 385 Pfam RRM-like domain 59 138 IPR021790 -
Pste4g02574 385 SUPERFAMILY RNA-binding domain, RBD 196 381 IPR035979 GO:0003676
Pste4g02574 385 Gene3D - 195 290 IPR012677 -
Pste4g02574 385 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 309 384 - -
Pste4g02574 385 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 376 IPR000504 GO:0003723
Pste4g02574 385 SUPERFAMILY RNA-binding domain, RBD 2 56 IPR035979 GO:0003676
Pste4g02574 385 CDD RRM3_PTBPH3 197 272 IPR034797 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02574 Pste-Chr4 18197985 18208119 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g00990 9 6409976 6419413 Pste4g02574 4 18197985 18208119 PCT