Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01972 TTGACGCACACACAGAGACCTGAGACAACACAAAACAAGACAAGCATTCTTCAAATCCAAATCACTTTCCGCCAATCAAGGACCCCACCCTACACTCAAATTTGCCCTCCCTCACTGTATCTCCTTCTTCCCATGCAACCTTCCCCCTCAGACCACGCTAACAAATGGACCAACAACCACCGCAACCGCAACCGCAACCGCAACCGCAACCGCAACCGCCACCGCCACCACGACAACACCGACCCCGACTCCGACCACCAATTCCCAATCCCTAACTCCCAATCCCCCATCCCTTCCGTCCAGATCGAGCTCGTCTCGCCCCACGCCGTCCAGATTTCCCACTTCCCGCCGGCGATCACCCGCGCCGTCGCCCGCCCCCACGCCTCGGTGGACGACGACGCCCACTGCGGGGCCGACAACGTTCCGCCTCTCGAGAATGTGTCCCACGGCCAGCTCCAGGCACTGTCGGCGCTCTCCGCCGACTGCCTCCCCGGCGGCCACACCTTCCTCGTGGCTCCGCCGCCGCTTTCCAAAGGCTCCGGCGTCGTTAAGCGGTTCGGGAATTGGTTTTCTCCAGCGTCAGTGCATCGACTTGAGAGACAAGTAGTTCCGCATTTCTTCTATGGAAAGTCGCCTGATCATACACCGGAGAAGTACATGGAATGTAGGAACTACATTGTTGCAAGATACATGGAAGACCCCGGGAAGAGGATTACAGTCTCTAGTTGCCAGGGATTGTCATTTGGTGTTGATACTGAAGATTTAAGTCGAATTGTCAGGTTCCTTGATCACTGGGGAATTATCAATTACTGTGCTCAGGGCTCAAGTCGTGAGTATTTAGACAGTGAGGCTTGCCTGAAGGAGGACGCAAGTGGTGCAATATGTGTGCCATCTGCAGCTTTAAGATCCATAGATAGTTTGATTAAATTTGACAAGCCCAAGTGTAAATTCAAAGCAGACGAAATTTATTCATCTCGAACAATGCACAGTACAGATGTTTCTGATTTGGATGACAGAATAAGAGAGCATCTATCTGAAAACCATTGCCATTGTTGTTCTTGTTCTCTTCTTGTTGCATACTACCAATCACAAAAAGAGGTACACTGGCCTTTTGATTTAATTCATCTCCTTTGTCTCTCTACCATGAATAATGCTGCAGCTGTCAATTGCTTTTGTCCTATTGGTAGTATGCTACTTGAATGGGCAATCTTCCATTTAACCATAACAAAGTCTGACAGCTGGCAAATGATTGCCGGTCTCTTATGGGCACATTATGATGACCCTCCTCTAAAGCTAAGCTGCAGAATGCCTTTGGAAACATTTGTCTTTAATTGTAGTTGGCATCCCATGTTACAGGTTGATATTTTACTCTGCACTGACTGCTTTCACGAAGGGAGATTTGTCACTGGTCATTCTGGTTTAGATTTTATAAGAGTGGATTCAACTACAGATTATGGTGATCCAGATGGAGATAGTTGGACTGATCAAGAGACATTACTGTTGCTTGAGGCAGTGGAGGTTTACAATGATAATTGGAATGATATTGCTGAGCATGTTGGTACCAAGTCGAAAGCTCAATGCATTCTTCATTTTCTCCGTCTACCTGTGGAAGATGGAAAGTTGGACAATATCGATGTTTCAAGTTTGTCTTTGTCATCAAATCTGAAGAATCGAGAGGATAATGGAAGATTGCATTGTTACACAAATGGAGATTCTGCAGGACCTGTACATAAAAACGAAGATTTTGATGGCAGGCTTCCTTTTGCTAACTCTGGAAATCCAGTTATGGCACTGGTTGCCTTTTTAGCCACTGCTGTTGGACCAAGAGTAGCTGCAACTTGTGCCCATGCAGCATTAGCTGCATTGTCAGAGAATAATTCTGGGTGCACGTCACATACAGAAGCAGTGGAAAATCATAATAGGACAAATTCAGAAAGCATACATAATAGAGATGGTAGTCTTCATGGAGTGATTGCAAATTCAAATCATAAAAATGAGGACAAGTCAAAAGTACTTGGTTCATGTGCTCAAAACGAGGGTGGCTCGATCCTGCTATCTACTGAGAAAGTTAAAGATGCTGCTAAAGCAGGTCTCTCTGCTGCAGCAATGAAAGCCAAATTGTTTGCTGATCATGAAGAGCGAGAAATTCAGAGGCTATGTGCCAATATTGTTAATAATAAGTTGAAAAGATTGGAACTGAAGCTGAAGCAGTTTGCAGAAATTGAGACACAGTTGATGAGAGAATGTGAACAAGTTGAGAAGGTGAGGCAGAGGTTTGCTTCTGAACGGTCGCAAGTTGTATCAACACGTCTTGGAAATGGTGGAACCACTTCTCTAATGAATATAGCAACTGTTAGTCCATCCATGGTTAACAATAATAGCAACAGTAGGCCTCAAATAATTTCTGCTCCTTCCTCACAGCCTAGCACCTCTGGGTATGGCAACAGCCATCTAGTTCATCCACACACATCCTTTGTCCCTCGCCCTTCAATGTTTGGGTTGGGGCAAAGGTTGCCCCTTTCTATGATACAACAATTACAATCGGTGTCTTCAAATCCAATGTTCAATGGCCCCGGACATGTGCAACCTCCAAATAATTCGATGTCGAGGTCTGTGTCCAGGACTAACTCTGGTTTAGGTTAATTAGGGATTCAACGGTAGGTTTGAAACGTGTATTATTTGGTCATTGTTTTCAGTTTAGAGTAGTGCCAAGAAATTTGTTTTGATTTTATTTTAGGGTCTATCATGTGTTTCAGTTAAAGGAAATAGGTAGTAGCATTTGATTTTCCAAAGTTCTAGTGTGTATATCCTATTGCTTTTCGCATTAGGGAACATGAAATGGTTATTGTCATCAAAGAAAAGTAATCTAGTAGTTTTACGCAACCCATTAACATGAAGAATCATTATATGGCCCTAGTGACTTTTTTGTCTCCACTGTCTTTGATGTTGTACATTCTAATTCCATGTTACTTGGACATGCCTATATTATATTGTTTGTGTCACCGGCACAGGGTG 3015 0.4444 MQPSPSDHANKWTNNHRNRNRNRNRNRNRHRHHDNTDPDSDHQFPIPNSQSPIPSVQIELVSPHAVQISHFPPAITRAVARPHASVDDDAHCGADNVPPLENVSHGQLQALSALSADCLPGGHTFLVAPPPLSKGSGVVKRFGNWFSPASVHRLERQVVPHFFYGKSPDHTPEKYMECRNYIVARYMEDPGKRITVSSCQGLSFGVDTEDLSRIVRFLDHWGIINYCAQGSSREYLDSEACLKEDASGAICVPSAALRSIDSLIKFDKPKCKFKADEIYSSRTMHSTDVSDLDDRIREHLSENHCHCCSCSLLVAYYQSQKEVHWPFDLIHLLCLSTMNNAAAVNCFCPIGSMLLEWAIFHLTITKSDSWQMIAGLLWAHYDDPPLKLSCRMPLETFVFNCSWHPMLQVDILLCTDCFHEGRFVTGHSGLDFIRVDSTTDYGDPDGDSWTDQETLLLLEAVEVYNDNWNDIAEHVGTKSKAQCILHFLRLPVEDGKLDNIDVSSLSLSSNLKNREDNGRLHCYTNGDSAGPVHKNEDFDGRLPFANSGNPVMALVAFLATAVGPRVAATCAHAALAALSENNSGCTSHTEAVENHNRTNSESIHNRDGSLHGVIANSNHKNEDKSKVLGSCAQNEGGSILLSTEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIVNNKLKRLELKLKQFAEIETQLMRECEQVEKVRQRFASERSQVVSTRLGNGGTTSLMNIATVSPSMVNNNSNSRPQIISAPSSQPSTSGYGNSHLVHPHTSFVPRPSMFGLGQRLPLSMIQQLQSVSSNPMFNGPGHVQPPNNSMSRSVSRTNSGLG 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01972 836 Pfam Myb-like DNA-binding domain 448 490 IPR001005 -
Pste8g01972 836 MobiDBLite consensus disorder prediction 749 770 - -
Pste8g01972 836 FunFam SWI/SNF complex subunit SMARCC2 isoform C 445 495 - -
Pste8g01972 836 ProSiteProfiles Myb-like domain profile. 448 491 IPR001005 -
Pste8g01972 836 MobiDBLite consensus disorder prediction 15 30 - -
Pste8g01972 836 FunFam SWI/SNF complex subunit SMARCC2 isoform c 143 231 - -
Pste8g01972 836 PANTHER SWI/SNF COMPLEX-RELATED 31 727 - -
Pste8g01972 836 SUPERFAMILY Homeodomain-like 446 500 IPR009057 -
Pste8g01972 836 CDD SANT 448 490 IPR001005 -
Pste8g01972 836 Gene3D - 445 495 - -
Pste8g01972 836 SMART sant 445 493 IPR001005 -
Pste8g01972 836 ProSiteProfiles SWIRM domain profile. 137 235 IPR007526 GO:0005515
Pste8g01972 836 Gene3D - 143 230 IPR036388 -
Pste8g01972 836 MobiDBLite consensus disorder prediction 1 53 - -
Pste8g01972 836 MobiDBLite consensus disorder prediction 587 616 - -
Pste8g01972 836 Coils Coil 677 704 - -
Pste8g01972 836 Pfam SWIRM domain 144 226 IPR007526 GO:0005515
Pste8g01972 836 ProSiteProfiles SANT domain profile. 444 495 IPR017884 -
Pste8g01972 836 Pfam SWIRM-associated region 1 652 726 IPR032451 -
Pste8g01972 836 SUPERFAMILY Homeodomain-like 141 232 IPR009057 -
Pste8g01972 836 MobiDBLite consensus disorder prediction 806 836 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01972 Pste-Chr8 15368476 15374896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01972 409 487 EF-hand Containing Proteins AT3G07740 33.333 2.34e-07 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01972 8 15368476 15374896 Pste8g01972 8 15368476 15374896 ECH
Pste8g01972 8 15368476 15374896 Pste2g03152 2 31461149 31468031 PCT