LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g01965	ATCTTTTTCCATTTCATCACTTGTTTCTGAGACAAAACTTTCTCTTTGAATCATTTCAACCTTTTACCCTCTCTCATAAACTTGTTTCCAACTATGGATGTTAGCATAGCATTCAACACCCTTTTGCTATTTCTTCTATTTTCTGCCATTTTCCCACTCTCTTCTTTCTCAGCTGCCAATCAGCCCCGCTATGCCAAGAAGCCCAACACCCCCTCTTCTCATAATCATCACCTTTCCTCCTCTGCTGTTTTCAAAGTTCAGGGAAATGTGTACCCTCTTGGCCATTACACAGTGACCCTCAATATTGGATATCCCCCCAAGCTTTACGACCTTGACATTGACTCAGGCAGTGACCTCACTTGGGTTCAGTGTGATGCACCATGTAAAGGTTGTACCAAGCCTCGTAATCAACTTTATAAGCCCAATCACAACCTTGTGCAATGTATGGACCCATTGTGTTCTGAAGTGCACTTATCTACAGAGTCTACAGACTATAATTGTGCCGCCCCAGATGACCAATGTGACTATGAGGTTGAGTATGCAGACCATGGATCATCTCTAGGTGTGCTAGTCCGAGACTATATACCCTTTCAATTTATCAATGGCTCTGTGGTGCGCCCCAGGGTAGCCTTTGGGTGTGGGTATGATCAAAAGTTTTCTGGTTCTACCTCCCCACCCTCTACAGCAGGAGTTCTTGGCCTTGGCAATGGCAGAGCAAGCATTTTATCTCAGCTTCATTCTTTGGGTCTGATCCGCAATGTAGTTGGTCATTGCTTGAGTGCTAGAGGAGGAGGGTTTTTGTTCTTTGGAGATGATTTCATTCCCTCTTCAGGAATTGTTTGGACATCCATGTTGCCTGGTTCTTCAGAAAAACACTATAGCTCAGGTCCAGCAGAACTGTTCTTCAATGGAAAGACAGCTAATGTTAAGGGTCTTGAACTTATTTTTGATAGTGGGAGCTCTTACACATACTTGAACTCCCAAGCCTATCAAGCTGTTGTTGATTTGGTGACTAAGGATTTAAAGGGAAAACAGTTAAAAAGAGCAACCGAGGACCCATCACTTCCCATTTGTTGGAAGGGTTCAAAATCTTTCAACTCGTTAAGTGATGTAAAGAAATATTTCAAGCCCCTAGGATTGAGTTTCACTAGAGACAAGAATTTGCAGATGCATCTACCACCAGAAGCTTATCTTATTATCACTAAACATGGCAATGTCTGCTTGGGGATTCTAGATGGCACTGAAGTAGGACTAGAAAATCTTAACATAATAGGAGACATCTCTTTACAAGATAAAATGGTGATTTATGATAACGAGAAACAGCAGATTGGATGGGTTTCTTCAAATTGTGACACATTTCCCAAGTAACAAGTTATCCTTGTGGTTTCTTATATAATTATGAACACCAATAAATGTTACAAGGAAATATTTTCCTGGTTCATTAACAGTGTGGATCGTGATTTGGAAGGTAATTTTGCACACCCATACACAACCAATTTGGATATTTTTGGGGATCGTTGCCCTGCATCTTATGAAGAAACAGACTGAATGAGTTGTTACGACGAGGGTGCTCGAATGTAGATTAGATAGCAGATAGCATCTATGATTCCATATTGTATAACATATATATACATAGTTTTTTTTTTTTGTCACCTTACAACAATATTTTATGCTTGAGCTTCATTTTGTGAATCTGTAAATGATAACTAGCAAACATCACTAGTTACAGTTACTG	1735	0.4017	MDVSIAFNTLLLFLLFSAIFPLSSFSAANQPRYAKKPNTPSSHNHHLSSSAVFKVQGNVYPLGHYTVTLNIGYPPKLYDLDIDSGSDLTWVQCDAPCKGCTKPRNQLYKPNHNLVQCMDPLCSEVHLSTESTDYNCAAPDDQCDYEVEYADHGSSLGVLVRDYIPFQFINGSVVRPRVAFGCGYDQKFSGSTSPPSTAGVLGLGNGRASILSQLHSLGLIRNVVGHCLSARGGGFLFFGDDFIPSSGIVWTSMLPGSSEKHYSSGPAELFFNGKTANVKGLELIFDSGSSYTYLNSQAYQAVVDLVTKDLKGKQLKRATEDPSLPICWKGSKSFNSLSDVKKYFKPLGLSFTRDKNLQMHLPPEAYLIITKHGNVCLGILDGTEVGLENLNIIGDISLQDKMVIYDNEKQQIGWVSSNCDTFPK	424

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste8g01965	424	Gene3D	Acid Proteases	245	423	IPR021109	-
	Pste8g01965	424	ProSiteProfiles	Peptidase family A1 domain profile.	65	415	IPR033121	-
	Pste8g01965	424	Gene3D	Acid Proteases	39	240	IPR021109	-
	Pste8g01965	424	FunFam	Aspartyl protease family protein	41	240	-	-
	Pste8g01965	424	FunFam	Aspartic proteinase Asp1 isoform A	244	423	-	-
	Pste8g01965	424	ProSitePatterns	Eukaryotic and viral aspartyl proteases active site.	283	294	IPR001969	GO:0004190\|GO:0006508
	Pste8g01965	424	SUPERFAMILY	Acid proteases	57	421	IPR021109	-
	Pste8g01965	424	PANTHER	ASPARTYL PROTEASES	42	413	IPR001461	GO:0004190\|GO:0006508
	Pste8g01965	424	CDD	nucellin_like	63	419	IPR033823	GO:0004190
	Pste8g01965	424	Pfam	Xylanase inhibitor C-terminal	282	414	IPR032799	-
	Pste8g01965	424	PRINTS	Pepsin (A1) aspartic protease family signature	283	294	IPR001461	GO:0004190\|GO:0006508
	Pste8g01965	424	PRINTS	Pepsin (A1) aspartic protease family signature	391	406	IPR001461	GO:0004190\|GO:0006508
	Pste8g01965	424	PRINTS	Pepsin (A1) aspartic protease family signature	71	91	IPR001461	GO:0004190\|GO:0006508
	Pste8g01965	424	Pfam	Xylanase inhibitor N-terminal	65	240	IPR032861	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g01965	Pste-Chr8	15200079	15203502	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g01965	43	424	Miscellaneous Gene Families	AT1G77480	60.313	2.07e-170	483

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste8g01965	8	15200079	15203502	Pste8g01965	8	15200079	15203502	ECH
	Pste8g01965	8	15200079	15203502	Pste2g03098	2	30926752	30929649	PCT