Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01856 ATGTGGAAGGAGGACGAGGCAGGAACCAGGTTGAATGGGTTTCCTGACCATGGCGGTCAGAAGAACGTGAATATAGATGTTGATGTGTTGCTGTCTAATGGTTTTTCTAGGATGAATGTTTTTCGTGAACGTGGGAACGTTGTTGGTGCCAAACCCAGGGGATGTACATATGGTTTTGTTGATGTTATGGACTCATCATCATACGCACATGTCTCGCACTCACATGAGCAAAAGGGTATCCTACTATCTCCCACTTCGGGTGTGACAGTTTCTTCTGATGTGAAGGGACACACTTTTGGGACCCCATTAGAGTCTTCTTTTGACAAAATCAGTAATACTTGTTGCGGACATGTTCCACTGCAGAACCCGTTTCATGTTACTGGGCCTTTTGCAGTGGATTGTGATGTCAATAGTCCTTTCATGTTCTCTCAACCCAACTTTGCTATGGATGCAAGCGCTCAAGCTCCATCATCACGTTATTTTTCTGCAGCAACAAGTGTTGCTTTAACCCCCAATATTGAATTTTCCCATACTAGAGGGGACCCTATGGCGTTTCAATGTGATGGTGGTTTGGTCATACAAGAGAAGGATGTGAAATGTTGTGTTGGAAGAGGGTGCAATTCTTTGTGGGGTTGCAAAGAGAGTTTATGTTCACCTTTACCGGTTCAAGCAGTGGGAGATGAACTTCCTCAACTTGTTTCTCCTCGTTTTTCTACTAGACATGAAAAGAATGGCACTCTTGCAAGTGATGTTTCTCTTTCTCCGCGGTCATTGCTGTTTAATTTTGGTCCTTTGGTTAAGTTCCAAGGCTATATTTATCACCTGGCAAAGGATCAGAACGGTTGTCGCTTCCTGCAGAGGATGGTTGATGAGGGTACCTCTGAAGATGTGCAAATAGTGTTTAATGGAGTCATAGATGATATTGTTGAGCTTATGCTGGATCCTTTTGGGAACTACCTAGTGCAAAAGTTGCTTGATGTGAGTGGAGAAGATGAAAGGTTGCAGGTTGTGTCAATGTTGACTAAAGAACCAGGGCAGCTAGTCAAAACGTCTTTGAATACCCATGGGACTCGGGTGGTTCAGAAGTTGATTGCAACGGCTGACTCTAGAAAACAAATTGCATTGCTGATATCTTCCATTCAACCTGGTTTTCTTGATCTTATTAAGGATCTGAATGGAAATCATGTCATACAGCGTTGCTTGCAATACTTTAGCTGTAAAGATAATGAGTTTATCTTTTATGCTGCTACAAAGTTCTGTGTTGATATCGCTACTCATCAACATGGATGTTGTGTACTACAACGTTGCATTGATTATTCCACCGGAAAGTACCAAGATAAACTGGTCAAGGAAATATGCAGACATGGGCTTCTCCTTGCTCAAGATCCATTTGGAAATTATGTTGTTCAGTATATTATAGAGATGGAGAACCCAAGTGCCTCATCCAAGCTGCATTCTCAGTTAAAAGGGAATTACGTACACCTCTCCATGCAAAAATTCAGCAGTCATGTGGTTGAAAAGTGCCTTGTGCATATTGCAGAGAGCAGAACAAGGATAGTCCAAGAGTTGTTGTCTTTTCCTCATTTTGAACAGTTGCTACCGGATCCATATGCCAACTATGTTGTTCAACGTGCTCTTGGGGTGACCAAGGGTCCTCTGCATGCATCTCTAGCCGAAGCAGTTCGCCCCTACAAAATCTTGCGCACCAGCCCTTATTGCAGAAGGATTTTCTCGAGGAATCTGCTTAACAAGTGATGTGTGACTGGCACATGTTGTTTGTATGTTGTGCTCACCTGAGTTACGTGCTACCTTTCTCCTAATTAAGTCCCTTTTACTTATATACTTTTATGTCTTGGCCACTATAGTATATGTTGTATGTAGTGCATATTTGACTGTACAAGAATCTGATCCAAAATATACCTGAGACAAGATTGAGCTAGGCTATGATCATTCCATGTGACCCTGGGTCTGAAAGTTCCAAAGGCAAGTTTTGTATGATGCAGGTTTGTCTTGCATTATTTTGTTGTCCTATGATGTGTGATGTATGGTACATCCTAAATACTATGTTATTTTCTAGTTTTATGAATAGATGATGTACTTTGTCCTGGATATTGTATTTTGATTTTGTTTCGAG 2134 0.4161 MWKEDEAGTRLNGFPDHGGQKNVNIDVDVLLSNGFSRMNVFRERGNVVGAKPRGCTYGFVDVMDSSSYAHVSHSHEQKGILLSPTSGVTVSSDVKGHTFGTPLESSFDKISNTCCGHVPLQNPFHVTGPFAVDCDVNSPFMFSQPNFAMDASAQAPSSRYFSAATSVALTPNIEFSHTRGDPMAFQCDGGLVIQEKDVKCCVGRGCNSLWGCKESLCSPLPVQAVGDELPQLVSPRFSTRHEKNGTLASDVSLSPRSLLFNFGPLVKFQGYIYHLAKDQNGCRFLQRMVDEGTSEDVQIVFNGVIDDIVELMLDPFGNYLVQKLLDVSGEDERLQVVSMLTKEPGQLVKTSLNTHGTRVVQKLIATADSRKQIALLISSIQPGFLDLIKDLNGNHVIQRCLQYFSCKDNEFIFYAATKFCVDIATHQHGCCVLQRCIDYSTGKYQDKLVKEICRHGLLLAQDPFGNYVVQYIIEMENPSASSKLHSQLKGNYVHLSMQKFSSHVVEKCLVHIAESRTRIVQELLSFPHFEQLLPDPYANYVVQRALGVTKGPLHASLAEAVRPYKILRTSPYCRRIFSRNLLNK 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01856 584 ProSiteProfiles Pumilio RNA-binding repeat profile. 451 486 IPR001313 GO:0003723
Pste8g01856 584 ProSiteProfiles Pumilio RNA-binding repeat profile. 379 414 IPR001313 GO:0003723
Pste8g01856 584 ProSiteProfiles Pumilio RNA-binding repeat profile. 303 338 IPR001313 GO:0003723
Pste8g01856 584 SMART pum_5 267 302 IPR001313 GO:0003723
Pste8g01856 584 SMART pum_5 451 486 IPR001313 GO:0003723
Pste8g01856 584 SMART pum_5 342 378 IPR001313 GO:0003723
Pste8g01856 584 SMART pum_5 303 338 IPR001313 GO:0003723
Pste8g01856 584 SMART pum_5 524 559 IPR001313 GO:0003723
Pste8g01856 584 SMART pum_5 379 414 IPR001313 GO:0003723
Pste8g01856 584 SMART pum_5 487 521 IPR001313 GO:0003723
Pste8g01856 584 SMART pum_5 415 450 IPR001313 GO:0003723
Pste8g01856 584 ProSiteProfiles Pumilio RNA-binding repeat profile. 339 378 IPR001313 GO:0003723
Pste8g01856 584 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 242 584 IPR033133 GO:0003723
Pste8g01856 584 CDD Pumilio 270 579 IPR033712 GO:0003723
Pste8g01856 584 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 170 579 - -
Pste8g01856 584 Pfam Pumilio-family RNA binding repeat 384 413 IPR001313 GO:0003723
Pste8g01856 584 Pfam Pumilio-family RNA binding repeat 272 303 IPR001313 GO:0003723
Pste8g01856 584 Pfam Pumilio-family RNA binding repeat 458 478 IPR001313 GO:0003723
Pste8g01856 584 Pfam Pumilio-family RNA binding repeat 308 340 IPR001313 GO:0003723
Pste8g01856 584 Pfam Pumilio-family RNA binding repeat 420 453 IPR001313 GO:0003723
Pste8g01856 584 Pfam Pumilio-family RNA binding repeat 347 378 IPR001313 GO:0003723
Pste8g01856 584 Pfam Pumilio-family RNA binding repeat 491 524 IPR001313 GO:0003723
Pste8g01856 584 Pfam Pumilio-family RNA binding repeat 535 546 IPR001313 GO:0003723
Pste8g01856 584 SUPERFAMILY ARM repeat 267 578 IPR016024 -
Pste8g01856 584 ProSiteProfiles Pumilio RNA-binding repeat profile. 487 525 IPR001313 GO:0003723
Pste8g01856 584 ProSiteProfiles Pumilio RNA-binding repeat profile. 267 302 IPR001313 GO:0003723
Pste8g01856 584 Gene3D - 260 582 IPR011989 -
Pste8g01856 584 ProSiteProfiles Pumilio RNA-binding repeat profile. 415 450 IPR001313 GO:0003723
Pste8g01856 584 FunFam Pumilio homolog 9 259 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01856 Pste-Chr8 13264524 13270392 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01856 8 13264524 13270392 Pste8g01856 8 13264524 13270392 ECH
Pste8g01856 8 13264524 13270392 Pste2g02770 2 27787220 27790661 PCT