Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00322 ATTTTTCTTACACTTTTAAACAAATATCATATCAAACTTAAAACACAAAAAATCCAATTTTGTGACTCAAAACTTAGGATGTTCGCATGACAAACATAGCCTACCTTGCTCTGCAGTTGAAGAGTTTAAGTCCTAAATTTAGGGCGTTCTTTTTTCCGAATTATTATTTTTTTTTTCTATAAAAAAAAGCGAGTTGAGTAAATAGGGTGATTCTAGTAATTGGGGCAGTTCCAAGCAGTTATAGTCCTCGAAGATTAAGCAAAATATTTTGCCTCAAATTTGTGACTATTCAACATCTGTGATTTTCTAAAAGGTTTTAAATTTTAAAGGAAATAAAAACTGCAGAGTCACTACTTTAGAGTGTGTGTAGGGGGTCACTAGATTTTATTTTGCAGAAGAGAAGAGAGAGAACCATAAATGGTGTCTTTGCTACTCTCAAAGATTCTGAGCCTTTTCAAAAGCATTTCTCTGTTTGCTTTTTTGGATTAGGATGACATAACTCTCTGAATGTGCGTGCGGGTCCTAGTAGAGAAAGAAAAAGGATAAGAGTTATGGATTCTCCCTACACAAGGATTGTCTTTGATAAAATTCAGAAATACGAGCCAGAGCATGCCGGAAAGATAATTGGTTATCTCCTCTTTCAAGACCATGGAGAACAAGAAATGGCTAAAATGGCCTCATGTCCTGACTATCTCATCCGTGAAGTGGTTGTTCAGGCCAAAAAAGAACTTCTAAGGTTGGCGGTTAAACCAGATATGCTTCCAATTTCACATACTGTCAACCCTCAACAAGGTTTAGGCCACTTATCAATAATCTCCCCTAGAACTCCTACCTCACCTAACTTTCAGGTGCCTCCTTCCTATTGGGATCCCCAATCTGCCGGCAATATCAGCCAAGACTTCGGCAATATCAACCAAGATTTCATGTCAATGAATTATTTTGATTCTAATCCTATTGCAGAGCTTCAGAAGCAGACACATATGCTCACTTTGGATAATCATATAGATGCAGTAAATACTGGGACAGGAGGTATTGCCAATGATTACTATGGCTTAGACACTTCTGCTGCTAACCTGGGTGTAAAACCTGGGAGAAGGTTCTCTGACTTTCCTATGAAGACCTGTCATTATTTCAACAAAGGATTCTGTAAGCATGGAACTAGTTGCAGATTCTATCATGGGCAAGTTGTCCCTGAGACCTTCTCTCAGATGTATGGAAGTGATCCTATTAGTGAGGATCAGGTGGTTTCCCCAGGGTCACTGGCACAGTTAGAGTCAGAAATTATTGACCTTCTAAGATCAAGAGGCGGTCCCATGTCAATTGCTTCCCTGCCCATGGCATACTACGATAAATATAAGAAGGTACTGCAAGCAGATGGTTATTTAACTGAGAGCCAGAGACATGGTAAGTCTGGGTATAGTTTGACAAAGCTTCTTGCACGACTGAAAAATAGTATTCGCCTAATAGGCAGACCTCATGGGCAGCATTCAGTGGTTCTAGCAGAAGATGCTCCCACACAAATGCAAAAGGGAGATTTTGGTCGAAACACCAGTGCATCACGGCAAATATATTTGACATTTCCAGCTGACAGTACTTTTACTGAGGATGATGTCTCAAACTACTTCAACACATTTGGGCCTGTTGCAGATGTTAGGATTCCTAACCAGCAGAGAAGGATGTTTGGATTTGTGACGTTTGTCCATTCAGAAACTGTCAAAACTGTTTTGGAAAAGGGAAATCCACACTGTGTTCGAGGTTCTCGGGTGCTTGTGAAACCTTACAGGGAGAAAGCCAAGGTTAATGAAAGGAAGTACACAGATAGGACTGAGCATGTTTGTTTCTCACCACACTATGTAGATACAGACTCTGAACTTAACTCAATTCCAAGAATTTTTGGGAGCCATAGATCCATTAGGAGACAGCTAATTGAAGAGCAAGAACAAGAGCAAGCCCTGGAATTTCAGAGGAGAAGTCTTGCACAGCTGCAGTTTGCCCAAAAATCTTTCTCCAGTTCACCTCATTTTGGCTTCTCTATGGATGAGTCAAGAATTTCAGATGCAGAAGAATCTTTCAGTTTTCCACTGCATGGCAAATCCAGGCATACAGATATCAATTTCTCTGATGAGGACAGCAATCAAGGACTTAATCTCCCGGACAGTCCATTTGCATTTCCAATAGATAGTGGGATGAGACCTTGGGCCGATATGTTACCATATACC 2219 0.4024 MDSPYTRIVFDKIQKYEPEHAGKIIGYLLFQDHGEQEMAKMASCPDYLIREVVVQAKKELLRLAVKPDMLPISHTVNPQQGLGHLSIISPRTPTSPNFQVPPSYWDPQSAGNISQDFGNINQDFMSMNYFDSNPIAELQKQTHMLTLDNHIDAVNTGTGGIANDYYGLDTSAANLGVKPGRRFSDFPMKTCHYFNKGFCKHGTSCRFYHGQVVPETFSQMYGSDPISEDQVVSPGSLAQLESEIIDLLRSRGGPMSIASLPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIGRPHGQHSVVLAEDAPTQMQKGDFGRNTSASRQIYLTFPADSTFTEDDVSNYFNTFGPVADVRIPNQQRRMFGFVTFVHSETVKTVLEKGNPHCVRGSRVLVKPYREKAKVNERKYTDRTEHVCFSPHYVDTDSELNSIPRIFGSHRSIRRQLIEEQEQEQALEFQRRSLAQLQFAQKSFSSSPHFGFSMDESRISDAEESFSFPLHGKSRHTDINFSDEDSNQGLNLPDSPFAFPIDSGMRPWADMLPYT 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00322 556 Gene3D - 337 418 IPR012677 -
Pste8g00322 556 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 344 415 - -
Pste8g00322 556 ProSiteProfiles OST-type HTH domain profile. 236 318 IPR025605 -
Pste8g00322 556 CDD RRM_AtC3H46_like 339 408 IPR034365 -
Pste8g00322 556 Pfam OST-HTH/LOTUS domain 236 314 IPR025605 -
Pste8g00322 556 Gene3D - 184 221 - -
Pste8g00322 556 SMART rrm1_1 338 408 IPR000504 GO:0003723
Pste8g00322 556 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 404 IPR000504 GO:0003723
Pste8g00322 556 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 189 211 IPR000571 GO:0046872
Pste8g00322 556 SUPERFAMILY RNA-binding domain, RBD 347 419 IPR035979 GO:0003676
Pste8g00322 556 ProSiteProfiles Zinc finger C3H1-type profile. 185 212 IPR000571 GO:0046872
Pste8g00322 556 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 542 - -
Pste8g00322 556 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 412 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00322 Pste-Chr8 1746302 1752845 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00322 8 1746302 1752845 Pste8g00322 8 1746302 1752845 ECH
Pste7g01401 7 12759708 12764633 Pste8g00322 8 1746302 1752845 PCT