Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01401 GTTATGGACTTCGAGAATTAAGCAAAATAATTTGCCTGGTATCAGTGATTACTTAACAGCTGTATATTGTTTTGTAAGATGGGTATAAAGAAGGCCAAATATAGTGAGTCAGCACAGTGAATGAGTCTCATAACTGAGAGTGTTAGTGCTTAGTGTGCGAGTGTTGGTAACTGGCTTTAACTGCTCAGAGAGAGAAAGAGAGTATAAACCATTGGATGTTTGCATCTATTTGGATTCTAGACTTTTTCAAAAGCACTCCTCAGTTTATGATGATATGGCTCTCTGAACGAGAAATGAATCTCTGAGATTTGTAGGAGAGAGAAAAAGATCTGTGCTTGAGAAGCACCTCCAGATTGTTTATATCCTTCTTTTGTTTCATGGGTTGTTTTAACTTCTTACATTGACTAAAAGCTATGGATCTTTCGGAATACACAAAGATTGTTCTTGATAAACTTCAGAGATTTGAGCCTGAGCATGCTACAAAGATCATGGGGTATCTCCTCTTACAAGACCATGGTGAGCAAGACATGGTGAAATTGGCTTCACTGCCAGACCACTTGATTCGAGATGTGGCATTCAAGGCCAGAGCCGAGCTTCAAAGGTTGGCTGCTAGATCTTCCATTCATCCAATTACACTCCCTGTTAACTCTCAACAAAGTTGCCACTTGTCAGTAATCTCCCCTACTTCAGTGATCACTCCTGGCACTCCTACTTCACCCGCAAGCTTTCAGCTTCAGTCTCCATACTGGGATAGCAATACCAATGCAGAATTTATGGCAATAAATTATTTGGATTCTATCTCAGAACTTCAGAAGCAGACCCCTTTGCTCAGTTTAGAGAATCATATAGACACTGTAAATTCCGGGACTGCTGGGATTGCTAATGATTTCTATGGCCTAGATGCTTCAGCTGGGAATTTGGGTGGGAATTTGGGTGGAAAGACTGGTAGAAGGTTTGATTTTCCAGTCAAGACCTGTCACTATTTCAACAAAGGTTTTTGTAAGCATGGAAATAGCTGTAGATATTATCATGGACAAGGCGTCCCAGATATATTCTCTCACATGTATGGAAATGATAATGATGATCAAGTTATTTCACCTGGGTCACTAGCACAATTAGAGTCAGAAATTGTTGAACTCCTAAAACTGAAAAAAGGTGGTTCTATATCAATTGCTTCCCTTCCAATGGCATACTATGATAAGTATAAAAAGGTGCTGCAGGCAGATGGCTACCTGACCGAGAGCCAGAGACATGGTAAGTCTGGCTACAGTTTGACAAAGCTTCTTGCACGGTTAAAGAATAGCATTCGGCTAATTGACAGGCCTCATGGGCAGCATTCGGTTGTTCTAGCAGAAGACGCTCCAAAGTTCAATGGGAAGGTTGATTATGGTAAATACATTAGTGCGTCACGTCAAATATATCTTACATTTCCGGCTGACAGCACTTTTAGTGAGAGTGATGTTTCAAACTACTTTAGCACTTTTGGGAAAGTTGAAGATGTAAGGATTCCAAGCCAAGAGAGGAGGATGTTCGGATTTGTAACGTTTGATGATCCTGAAACTGTTAAAGTAATTTTGGATAAGGGAAATCCTCATTATGTCTGTGAATCAAGGGTTCTTGTTAAACCTTATAAGGAGAAGCCAAAACTTATGCTCAGCTTTCAATTTCGTTGCAGGAAACACTCAGATAGAATCGAACACTCTTCTTATCATTCACCACACTACGTAGACATTGACACCGATCCTAACTCAATTCCAAGAGGTTGCAGGAACCCTCGATTTCTTAGGAGGCTTCTCATTGAACAGCAGGAGGAGGCAGCCCTTGAATTTCAGAGACGACGTTTTGCAGAGCTGCAACTGGCCCAAAAATCTTTTTCTACCACACCCCATTTAGGCTTCAACGCAGCAGTTTTAAAAATTTCAGATGATCATTTCAATGTCCACTCTGCAGAATCTCACAATCATGCTCCGAATGACAAAGCCAGATATACAGATAACAATTACAATGATGAGGACAGCAATCAAGGATTGAATCTTCCAGACAGCCCATTTGCATTTCCAATAGATAGTGGAATTTCAGCAGTAATGTAGTTTCAAAAATACATACAACACAAGACTACAAGAGAAATATACAGTTAAATAGCTCCCAGGCCAAAGGCAATATCTCTAGTTTGATACATATCATGCAGTCCTTTCAATGATCACTCTTCTCAACTAGCTCACCAGTTTAGAGTCAAAGTCACGAGTACATAAAAGCGGAAGCCACTCTTCACAACTGAATTGGTGAAATTAACAATAACAAGTGACACGTGTAAGAAGGTTATAGTTGTTTTTTAATCATAGAAAGATGATGAGGTTTGATGTCTAGAATATGACAGTATGAGTAATCAATTACTCTTTTAGAACAAGTATAATAATTATAATAATAATTGATATTATAAATTTTT 2446 0.3917 MDLSEYTKIVLDKLQRFEPEHATKIMGYLLLQDHGEQDMVKLASLPDHLIRDVAFKARAELQRLAARSSIHPITLPVNSQQSCHLSVISPTSVITPGTPTSPASFQLQSPYWDSNTNAEFMAINYLDSISELQKQTPLLSLENHIDTVNSGTAGIANDFYGLDASAGNLGGNLGGKTGRRFDFPVKTCHYFNKGFCKHGNSCRYYHGQGVPDIFSHMYGNDNDDQVISPGSLAQLESEIVELLKLKKGGSISIASLPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIDRPHGQHSVVLAEDAPKFNGKVDYGKYISASRQIYLTFPADSTFSESDVSNYFSTFGKVEDVRIPSQERRMFGFVTFDDPETVKVILDKGNPHYVCESRVLVKPYKEKPKLMLSFQFRCRKHSDRIEHSSYHSPHYVDIDTDPNSIPRGCRNPRFLRRLLIEQQEEAALEFQRRRFAELQLAQKSFSTTPHLGFNAAVLKISDDHFNVHSAESHNHAPNDKARYTDNNYNDEDSNQGLNLPDSPFAFPIDSGISAVM 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01401 558 MobiDBLite consensus disorder prediction 511 544 - -
Pste7g01401 558 MobiDBLite consensus disorder prediction 511 529 - -
Pste7g01401 558 CDD RRM_AtC3H46_like 335 404 IPR034365 -
Pste7g01401 558 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 550 - -
Pste7g01401 558 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 340 411 - -
Pste7g01401 558 Gene3D - 337 411 IPR012677 -
Pste7g01401 558 Pfam OST-HTH/LOTUS domain 231 310 IPR025605 -
Pste7g01401 558 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 208 IPR000571 GO:0046872
Pste7g01401 558 SUPERFAMILY CCCH zinc finger 183 208 IPR036855 GO:0046872
Pste7g01401 558 ProSiteProfiles Zinc finger C3H1-type profile. 182 209 IPR000571 GO:0046872
Pste7g01401 558 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 333 409 IPR000504 GO:0003723
Pste7g01401 558 SMART rrm1_1 334 404 IPR000504 GO:0003723
Pste7g01401 558 Gene3D - 182 247 - -
Pste7g01401 558 SUPERFAMILY RNA-binding domain, RBD 344 432 IPR035979 GO:0003676
Pste7g01401 558 ProSiteProfiles OST-type HTH domain profile. 231 314 IPR025605 -
Pste7g01401 558 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 392 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01401 Pste-Chr7 12759708 12764633 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g01401 7 12759708 12764633 Pste7g01401 7 12759708 12764633 ECH
Pste7g01401 7 12759708 12764633 Pste8g00322 8 1746302 1752845 PCT