Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00054 CACCGAACCTCACTTCACTGTTCACCAAACCAAACAACCAAACGCGTCATTACAATGTCTTCCTTCTCCTCTCTCAGGACCAGATCCTCACCGTTCCTCGCCCACCGCTTCCAGATCCGCCGCTCCTCCGCTTCTTCCTCCGCCCCCTCGCTCCTCTCCGGCCCGAACCCGGTCCGAACCGCCCTCGCTCGAACCTCTCTCTCAACCGTCCTAGCCGGCACCGCCGTCGGCCTTCTCCTATACGGCTTCTACACTTCTTCGCCCAATTCCGACTTTCACTCTTCACCGCTCCTCAAAACCTCACTATCTTCTCTCGTTGACCGGTCAACGCCCTCTCTCGACGACCACGATCCCCAACGACGTCGTTCCTTCTTCCCCAAAATTTCCCTTCCCGAAACCTCCGGTTCCTTGCTGCTTGGAGACGCTTTCAGGAGAAAGATTTTCTTCAACTATGAGAAGCGCATACGGTTGCGAAGTCCTCCGGAAAAGGTTTTTGAGTACTTTGCATCTGATCGTAGTCCAGAAGGAGAAGTACTGATGAAACCTGCAGATCTAATGCGTGCAGTGGTTCCTGTTTTCCCTCCATCGGAATCCTGCCTTGTTAGAGATGGATACTTAGAAGGAGAAAGGAGGCCGGGTCATCTACGCTGCCCCCCTTCTGAATTTTTTATGCTTTTTGATGTAAACAATGATGGGCTAATATCTTTTAAAGAGTATATCTTTTTTGTAACTCTACTCAGCATCCCGGAATCAAGCTTTTCAGTGACATTTAAAATGTTTGATGTCGACAATAATGGGGAGATAAGTAAGGAAGAATTCAAGAAAGTGATGGCATTGATGCGATCTCGTCATCGACAGGGTGTTCACCACAGGGATGGACTGCGAACTGGCCTGAAGGTGAATAATTCTGTGGAAGATGGAGGGCTGGTGGGATACTTTTTTGATAAAGATGGAAATGGACGCCTCCAGCATGATAAATTTGTAAAATTTTTGAGAGATTTGCATGATGAGGTAGATTTCTTGTTTTGCTTCAATCACATTGTGCCTTATGAGGTTTGA 1059 0.4816 MSSFSSLRTRSSPFLAHRFQIRRSSASSSAPSLLSGPNPVRTALARTSLSTVLAGTAVGLLLYGFYTSSPNSDFHSSPLLKTSLSSLVDRSTPSLDDHDPQRRRSFFPKISLPETSGSLLLGDAFRRKIFFNYEKRIRLRSPPEKVFEYFASDRSPEGEVLMKPADLMRAVVPVFPPSESCLVRDGYLEGERRPGHLRCPPSEFFMLFDVNNDGLISFKEYIFFVTLLSIPESSFSVTFKMFDVDNNGEISKEEFKKVMALMRSRHRQGVHHRDGLRTGLKVNNSVEDGGLVGYFFDKDGNGRLQHDKFVKFLRDLHDEVDFLFCFNHIVPYEV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00054 334 ProSitePatterns EF-hand calcium-binding domain. 243 255 IPR018247 -
Pste8g00054 334 Pfam EF hand 204 221 IPR002048 GO:0005509
Pste8g00054 334 ProSiteProfiles EF-hand calcium-binding domain profile. 296 319 IPR002048 GO:0005509
Pste8g00054 334 ProSiteProfiles EF-hand calcium-binding domain profile. 230 265 IPR002048 GO:0005509
Pste8g00054 334 SMART efh_1 200 228 IPR002048 GO:0005509
Pste8g00054 334 SMART efh_1 234 262 IPR002048 GO:0005509
Pste8g00054 334 CDD EFh 203 260 IPR002048 GO:0005509
Pste8g00054 334 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 28 321 IPR039800 GO:0005509|GO:0006851
Pste8g00054 334 SUPERFAMILY EF-hand 203 324 IPR011992 -
Pste8g00054 334 Pfam EF hand 238 261 IPR002048 GO:0005509
Pste8g00054 334 Gene3D - 141 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00054 Pste-Chr8 290281 293483 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00054 33 320 EF-hand Containing Proteins AT4G32060 65.529 9.66e-128 371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00054 8 290281 293483 Pste2g01667 2 17423012 17426616 PCT