LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste7g02098	GAAGGCAAAAGATGTTTGATGAAGATCCGGTGGCATAAAATAAAGATTTATGAGTATAGAGGAAAATGGCAAACACTAACAGCGCATCAAGATGGTCTCTGAATGGAATGACGGCCCTGGTCACCGGCGGCACCGTGGGATAGGGCATGCCATAGTGAGTGAGTTGGCTGCGTTTGGCGCCGCTGTGCACACTTGTTCCCGCACCCAAACAGAGCTTGACAAGTGCTTACAAGACTGGCACACTCTCGGATTTCGAGTAACTGGATCGCTCTGTGACGTCTCCTCTCCCTCCCAGAGAGATCAGCTTATTCGCCAAGTCTCATCCACCTTCGATGCCAAGCTTAACATCTATGTAAACAACGTTGGAACAAACTTTAGAAAACCAACTATTGAGTACACTGCTGAAGAATATTCACAGCTGATGACAGTTAATTTAGACTCCTCATTCCATCTCTGCCAACTTGTGAAAAGGGAAGCATCGTGTTCATTTCATCTGTTGCTGGTGTGCTCAGCCTCGCCACTGGATCTGTCTATGCAGCCAGTAAAGCTTACAAAAACTCTGGCTTGTGAATGGGCAAAGGACAACATAAGAACCAACTGTGTTGTACCATGGGCTACCAGAACCCCACTTGTACAACATTTGTTGAAAGACCCAAAGTTTGTGGACGATATTATGTCTCGAACTCCGATTAAGCGCATAGCAGAACCCGAAGAAGTGTCATCGTTGGTGACTTTCCTTTCTCTGCCTGCTGCTTCTTACATCACTGGACAGGGTGTTTATGAATCCGGATTGATCCATGAATCTAAATCAATTCAATTAGATTCAAACAATAAAACTTTTGGTCACACCGGTGTGATGCCTAGAGTTATGAGTTTTGGGAGAGAGGAATCTGTGATTGAAGAAATGACAGCTGCAGAGAACAGTATCCACAAAACTTCAAGATGGTCTCTTAACGGAATGACTGCTCTTGTTACCGGTGGAACTCGCGGAATTGGGCATGCCATAGTGGAGGACTTATGTGGATTTGGGGCCACTGTCCACACTTGTTCCAGAAACCAAGCTGAATTGGATAAGTGTTTGGCTGAATGGCGCAGTAAAGGGTTTTTGGTTTCTGGGTCTGTCTGTGATATCTCATCTCAACCCCAGAGAGAGAACCTCATTCAGGAAGTCACTTCCATCTTCAATGGCAAGCTTAACATTTATGTGAACAATGTTGGAGTGAACTATAGGAAGCCAACCATTGAGTACGGTGCTGAAGAGTATTCACAGATTATGACAGTCAATTTAGACTCTGCTTACCATCTCTGCCAACTTGCATATCCTCTTCTGAAATCATCTGGAATGGGAAGCATCGTGTTAATTTCTTCTATTGCTGGCGTGGTCAGCTTAGGTACTGGATCTGTCTATGCGGCATGTAAAGCTGCAATCAATCAGCTTACCAAATACCTGGCTTGTGAATGGGCTAAAGACAATATAAGGAGCAATTGTGTTGTTCCAGCCACTACCAATACACCACTTGTTGAACATCTTCTTCGCAACAAGAAGTATGTAGAAGAAATGTTATGTCGTACTCCTCTTGGGCGCATTGCCGAACCTCAAGAAGTTTCTTCTTTGGTGGTTTACCTTTGTCTACCAGCTGCCTCTTACATCACAGGACAAGTTGTTCTTGTTGATGGAGGATTATCCGTGAATGGATTTCAACCCAGCATGACAATAACATGACATTCACGTACTTCTCCCTTTGTATTTGTCTATATGTCTATTATCTTTGAAATAAAAAAATCCTTGGGTCAAAAATCCTTCTTACTTGACATTTGATTTAATTTCATCCTTGGCAGTTTTACTTTACCTACCTGCTTCCTAGACCATCATAGACAGGTTATTTCTTATTGATAGAGAATAAACCATGAAAGAATTTTGAACCAACATTAAAAATTGAG	1941	0.4286	MVSEWNDGPGHRRHRGIGHAIVSELAAFGAAVHTCSRTQTELDKCLQDWHTLGFRVTGSLCDVSSPSQRDQLIRQVSSTFDAKLNIYVNNVGTNFRKPTIEYTAEEYSQLMTVNLDSSFHLCQLVKREASCSFHLLLVCSASPLDLSMQPVKLTKTLACEWAKDNIRTNCVVPWATRTPLVQHLLKDPKFVDDIMSRTPIKRIAEPEEVSSLVTFLSLPAASYITGQGVYESGLIHESKSIQLDSNNKTFGHTGVMPRVMSFGREESVIEEMTAAENSIHKTSRWSLNGMTALVTGGTRGIGHAIVEDLCGFGATVHTCSRNQAELDKCLAEWRSKGFLVSGSVCDISSQPQRENLIQEVTSIFNGKLNIYVNNVGVNYRKPTIEYGAEEYSQIMTVNLDSAYHLCQLAYPLLKSSGMGSIVLISSIAGVVSLGTGSVYAACKAAINQLTKYLACEWAKDNIRSNCVVPATTNTPLVEHLLRNKKYVEEMLCRTPLGRIAEPQEVSSLVVYLCLPAASYITGQVVLVDGGLSVNGFQPSMTIT	543

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste7g02098	543	Gene3D	-	270	536	-	-
	Pste7g02098	543	Pfam	short chain dehydrogenase	15	127	IPR002347	-
	Pste7g02098	543	Gene3D	-	13	234	-	-
	Pste7g02098	543	FunFam	Short-chain dehydrogenase reductase	274	536	-	-
	Pste7g02098	543	PRINTS	Glucose/ribitol dehydrogenase family signature	366	377	IPR002347	-
	Pste7g02098	543	PRINTS	Glucose/ribitol dehydrogenase family signature	291	308	IPR002347	-
	Pste7g02098	543	PRINTS	Glucose/ribitol dehydrogenase family signature	413	429	IPR002347	-
	Pste7g02098	543	PRINTS	Glucose/ribitol dehydrogenase family signature	439	458	IPR002347	-
	Pste7g02098	543	PRINTS	Glucose/ribitol dehydrogenase family signature	460	477	IPR002347	-
	Pste7g02098	543	PRINTS	Glucose/ribitol dehydrogenase family signature	495	515	IPR002347	-
	Pste7g02098	543	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	439	458	IPR002347	-
	Pste7g02098	543	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	419	427	IPR002347	-
	Pste7g02098	543	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	366	377	IPR002347	-
	Pste7g02098	543	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	14	233	IPR036291	-
	Pste7g02098	543	FunFam	Short-chain dehydrogenase reductase	14	236	-	-
	Pste7g02098	543	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	289	533	IPR036291	-
	Pste7g02098	543	Pfam	Enoyl-(Acyl carrier protein) reductase	298	532	-	-
	Pste7g02098	543	Pfam	Enoyl-(Acyl carrier protein) reductase	152	230	-	-
	Pste7g02098	543	PANTHER	TROPINONE REDUCTASE	284	535	IPR045000	GO:0016491

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste7g02098	Pste-Chr7	19265926	19283242	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste7g02098	284	538	Miscellaneous Gene Families	AT2G29290	60.700	4.37e-109	324

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste7g02098	7	19265926	19283242	Pste7g02098	7	19265926	19283242	ECH
	Pste7g02098	7	19265926	19283242	Pste5g02274	5	15325682	15359613	ECH