Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01006 GTCTGCTACAGCCACCACACCGGAAAAAAATAATCCACTTCTGTCAGATTCTTTTCTTTATTTCACAGCTAAAAAACAGCACCGCTTTATAAATAAATGACATCACTATAATATTATGAGCCAACAACGACCATTACTCTTCACACCATCCCCAAAGATGCCTCTCTCACCCTTCCTCACTCTCACTTTCCTCTTTCTTCTGTCCATTCACTCTGTCGCTGCGATCTATTTAGCGATACCATCATGCTCTGAGATAGTATCGCTGAAAACTCGCAGCGACAGAATCTCTCTAACTGATTTTGGTGCTGTCGGAGACGGCCGCACACTGAACACGAAAGCGTTTAGAGCGGCCGTGTACCGCATTGAGCACCTCAAAAGGGCAGGTGGCACGGTACTGTACGTGCCGCCGGGGGTGTACTTAACAGAGAGCTTCAATCTCACCAGCCACATGACGCTTTATCTGGCTGCTGGAGCCGTTATCAAAGCTACACAACAGAATTTGGGGAATTGGCCTTTAATTGCACCCTTACCATCTTATGGAAGAGGAAGGGAGCTCCCTGGAGGAAGGTATATGAGTTTTATCCATGGAGATGGACTTAATGATGTGGTTATCACAGGTGAGAATGGGACAATTGATGGGCAAGGAGATGTGTGGTGGAACATGTGGAGACAGAGAACACTACAATATACAAGGCCAAACCTTGTTGAATTTGTGAATTCACAAGATATTATTATTTCAAATGTGATTTTCAAGAATTCTCCCTTCTGGAATATACACCCAGTTTATTGCAGCAATTTTGTCGTTCGATATGTCACAATTTTAGCTCCTCATTCAAGTTCAAATGTCTGCATAGAGGACTCATACATATCAACAGGAGATGATCTTGTGGCAGTGAAGAGTGGGTGGGATGAGTATGGCATTGCATACGGTCGCCCCAGCTACGGTATCACCATCCGGCGCTTAACAGGATCATCTCCATTTGCTGGCATTGCAATTGGCAGTGAAACCTCTGGTGGGGTGGAGAATGTGCTAGCTGAACACATCAACCTCTTCAACATGGGACTTGGTATCCACATCAAGACCAACATTGGCAGGGGAGGGCTAATCAAGAACATAACAGTGGCTCATGTGTATGTGGAGAATGCAAGGCAGGGAATAAAAATAGCAGGTGATGTAGGGGGCCATCCAGATGACAAGTTTGATCCCAATGCTCTTCCAGTTGTGAAAGGCATCACAATTAAGAATGTGTGGGGAGTGAAGGTTAATCAAGCAGGTTTGATACATGGATTGAAAAAATCCCCTTTCACTGATGTTTGTCTGCAAGATATCAACTTTCATGGCATGAAAGGACCAAGATCTCCCCCTTGGAAGTGTTCTGATGTGGTTGGATTTGCTCATCAGGTTAGCCCTTGGCCATGTGCTCAGCTGAGCAGCCAAGAGACTGGATCATGTGCTGTTTAGAGATTTTTACTCTCTTCAAGTATTGTAGTAATTGAGTGCTTATTTCATTGATTTCTTAAATTTAAAGCCATTGAATCACCACCTTTGGAATTGCATGATATAATATGAAATTAAGCTTAGTCAAACATGTTGAGCATCATGTGTCAAACTTGTTCATTATTTGATATTTGTGAGAGCGAAATGCTTAAGATGTATGTAAACAAATTTAATTAAGTACCTATCTAAGAAAAT 1693 0.4276 MSQQRPLLFTPSPKMPLSPFLTLTFLFLLSIHSVAAIYLAIPSCSEIVSLKTRSDRISLTDFGAVGDGRTLNTKAFRAAVYRIEHLKRAGGTVLYVPPGVYLTESFNLTSHMTLYLAAGAVIKATQQNLGNWPLIAPLPSYGRGRELPGGRYMSFIHGDGLNDVVITGENGTIDGQGDVWWNMWRQRTLQYTRPNLVEFVNSQDIIISNVIFKNSPFWNIHPVYCSNFVVRYVTILAPHSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSYGITIRRLTGSSPFAGIAIGSETSGGVENVLAEHINLFNMGLGIHIKTNIGRGGLIKNITVAHVYVENARQGIKIAGDVGGHPDDKFDPNALPVVKGITIKNVWGVKVNQAGLIHGLKKSPFTDVCLQDINFHGMKGPRSPPWKCSDVVGFAHQVSPWPCAQLSSQETGSCAV 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01006 448 Gene3D - 41 424 IPR012334 -
Pste7g01006 448 PANTHER PECTIN LYASE-RELATED 37 442 - -
Pste7g01006 448 SMART pbh1 302 323 IPR006626 -
Pste7g01006 448 SMART pbh1 241 273 IPR006626 -
Pste7g01006 448 SMART pbh1 275 296 IPR006626 -
Pste7g01006 448 SMART pbh1 365 385 IPR006626 -
Pste7g01006 448 SMART pbh1 331 352 IPR006626 -
Pste7g01006 448 SMART pbh1 202 227 IPR006626 -
Pste7g01006 448 Pfam Glycosyl hydrolases family 28 154 423 IPR000743 GO:0004650|GO:0005975
Pste7g01006 448 SUPERFAMILY Pectin lyase-like 48 438 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01006 Pste-Chr7 9218872 9224142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g01006 25 440 Glycoside Hydrolase AT4G23820 71.194 0.0 624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g01006 7 9218872 9224142 Pste7g01006 7 9218872 9224142 ECH
Pste7g01006 7 9218872 9224142 Pste8g00645 8 3353423 3361712 PCT