Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04424 atgaggattctcctattgcactggccgacacgaagcagggtaccaaaactccacctggatgtaggatgtttccaaaaattgaaaagcaaggaaagcaactcagaagtgaactataagcaaaccctcgagatcgaggattggatagattcgtgttccaaagagcaattgaagacgtaccaggaatggttcaacttagccgattcagacggagatggtcgtatcactggaaacgatgcaaccaaattctttgctctctccaacttatctcgctctcaactcaagcaggtttgggctattgctgatgccaaaagacaaggatttcttggttttcaagagtttgttatcgcaatgcagctcgttgccctggcacaagcaggatacgatatcaactcagatatccttaaaactgcaattgagaaggaagatattaaatctccagtaatggaagggcttgctgctttaatagaaaaaacaaggagtttgacgataaatgcccaacctgatgtatttgggagtgctcaacctcagcttctgccactcaattcgtgggctgctccaaaatctgtaaagaaactacccctctgtgcagttacatcaattattgatggcttgaagagattgtacatggagaggctaaagccgttggaggtcacatatcgattcaatgactttgtatctccattattgaccaacagtgattttgatgccaaaccaatggtcatgcttcttggtcaatattccacagggaaaacaaccttcataaaacacatgctaaggtgtgaatatccaggagcacacattggaccagagcctacaactgacagatttgttgttgtcatgtctggtcctgatgaaaggagtattcctggaaatacaatagctgttgacgctgatatgccttttagtggcctgacatcttttggtggttcatttttgtcgaagttccaatgttctcaaatgccacatccactgctagaggaaataacatttgtggatactcctggtgtcctctctggagaaaagcaaagaactcagcgaagttatgacttcactggtgttatatcttggtttgctgcaaaatgtgatctgattcttcttctatttgatcctcataagcttgacatcagtgatgaatttaaacgagtaattgggtctctacgtggtcatgatgacaagatacgtgtggttttgaataaggcagaccaaattgatactcaacaactcatgagagtttatggagcattgatgtggtctctgggaaaagttctgaatactccagaagttatgcgtgtatatattgggtcatttaatgataggactataaatgaaggctttgttggcccattaggacaggaactctttgagaaggaacagaatgatctccttgctgacttggtagatattccgagaaaagcatgcgacagtcggatcaatgaatttgttaaacgtgctagatctgctaaaattcatgcgtatataattagtcgtctaaggagtgaaatgcctgcaatgatgggcaaagctaaggctcaacaaagacttatagataatcttgaagacgaatttagaaaggttcaaagggagtttcatctgccagctggtgatttccccaatgtagaacacttcagagaggttttaagtggctatagcattgacaaatttgagaaacttaagcccaaaatgattcaagcagtagatgacatgcttggatatgaaataccagagttattgaagaaattcagaaatccgtatgattga 1758 0.0 MRILLLHWPTRSRVPKLHLDVGCFQKLKSKESNSEVNYKQTLEIEDWIDSCSKEQLKTYQEWFNLADSDGDGRITGNDATKFFALSNLSRSQLKQVWAIADAKRQGFLGFQEFVIAMQLVALAQAGYDINSDILKTAIEKEDIKSPVMEGLAALIEKTRSLTINAQPDVFGSAQPQLLPLNSWAAPKSVKKLPLCAVTSIIDGLKRLYMERLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHMLRCEYPGAHIGPEPTTDRFVVVMSGPDERSIPGNTIAVDADMPFSGLTSFGGSFLSKFQCSQMPHPLLEEITFVDTPGVLSGEKQRTQRSYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIGSLRGHDDKIRVVLNKADQIDTQQLMRVYGALMWSLGKVLNTPEVMRVYIGSFNDRTINEGFVGPLGQELFEKEQNDLLADLVDIPRKACDSRINEFVKRARSAKIHAYIISRLRSEMPAMMGKAKAQQRLIDNLEDEFRKVQREFHLPAGDFPNVEHFREVLSGYSIDKFEKLKPKMIQAVDDMLGYEIPELLKKFRNPYD 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04424 585 FunFam EH domain-containing protein 1 240 468 - -
Pste6g04424 585 PANTHER EH DOMAIN 58 582 - -
Pste6g04424 585 ProSiteProfiles EH domain profile. 55 144 IPR000261 GO:0005515
Pste6g04424 585 Gene3D - 240 468 IPR027417 -
Pste6g04424 585 Pfam Dynamin family 240 399 IPR045063 -
Pste6g04424 585 Pfam N-terminal EH-domain containing protein 203 235 IPR031692 -
Pste6g04424 585 CDD EH 59 125 IPR000261 GO:0005515
Pste6g04424 585 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 234 470 IPR030381 GO:0005525
Pste6g04424 585 SMART eh_3 48 143 IPR000261 GO:0005515
Pste6g04424 585 SUPERFAMILY EF-hand 44 129 IPR011992 -
Pste6g04424 585 Gene3D - 50 145 - -
Pste6g04424 585 SMART efh_1 92 120 IPR002048 GO:0005509
Pste6g04424 585 SMART efh_1 58 86 IPR002048 GO:0005509
Pste6g04424 585 ProSiteProfiles EF-hand calcium-binding domain profile. 54 89 IPR002048 GO:0005509
Pste6g04424 585 Pfam Domain of unknown function (DUF5600) 476 576 IPR040990 -
Pste6g04424 585 ProSiteProfiles EF-hand calcium-binding domain profile. 91 123 IPR002048 GO:0005509
Pste6g04424 585 Coils Coil 508 528 - -
Pste6g04424 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 505 IPR027417 -
Pste6g04424 585 Pfam Cytoskeletal-regulatory complex EF hand 54 120 IPR000261 GO:0005515
Pste6g04424 585 CDD EHD 239 483 - -
Pste6g04424 585 Gene3D - 204 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04424 Pste-Chr6 33534239 33540300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04424 48 585 EF-hand Containing Proteins AT4G05520 76.623 0.0 877
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04424 6 33534239 33540300 Pste2g02621 2 26415573 26420001 PCT