Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04083 atggccattgcaaagagtgctgccattcttattttgttctttgcattggcctgcaatgcgaataatgctccaatcgttgaaccagttgctggtcctgacatgttcagccacaaaaatatggctagggatgttctctttcctggagagaaaatagttaacgtccaggattttggagccaaaggtgatggcaagtttgattgcacccaggctttcatgaatgcatggaaaaaggtgtgccatgaatcctcagggccaacgaggcttttgattcctctaggcagattcttggtttcatcaatgtattttaatggaccatgcagtattccaagtcctgtaacaattcaagtgcaaggaactgttttggccaccacggatctttccgactatggtaacggcgactggctcatcttccagaaccacaatggcttgaaaatcattggtgggggcactttcgatggccagggcaaaaactcttggcaatactccgagaattgcgattcagccgccgacaattcatgcgccaggaatcctagcagcctttatttcagccaaagcagcaacgtgattatacagaatattagaacagcgaatcccaaaggctttcacatattcgttaccaaatgcacaaacgtcagattaagaaaacttaagttgcttgcaccggctaccagccccaatactgatggcattcatatcagccactcggacactgtcataatatcacgaaataccattgcaactggggacgactgtatttctatgatccaaggagtgaagaatatttttatcaacaaactcagatgtggccctggacacggtattagcatcggtagccttgggaagtatccggatgaatcagaggtgagaggcattcgtatcaagaactgcacattgagtggcacaaccaatggccttagaatcaaatcgtggccagataagtatccaggtgcagcctcagaaataagcttcagtgaaattgtcatgactgatgtcaaaaatcctatcatcattgaccaggagtatgaatgctatccaaactgcaaaaagaagccgtcacttgtaaagctccaaaatattcactttgcaaatgtaaggggaactacaacttcagaacttgcagtggatttgaggtgcagcaagctgtacccatgccaaggtattacagttagggacgttgacctgaagtttggactcgctccaacaacctcaagatgtatcaatactcaacctctctttgctggcctgctaatgcccccatcttgcctatag 1269 0.0 MAIAKSAAILILFFALACNANNAPIVEPVAGPDMFSHKNMARDVLFPGEKIVNVQDFGAKGDGKFDCTQAFMNAWKKVCHESSGPTRLLIPLGRFLVSSMYFNGPCSIPSPVTIQVQGTVLATTDLSDYGNGDWLIFQNHNGLKIIGGGTFDGQGKNSWQYSENCDSAADNSCARNPSSLYFSQSSNVIIQNIRTANPKGFHIFVTKCTNVRLRKLKLLAPATSPNTDGIHISHSDTVIISRNTIATGDDCISMIQGVKNIFINKLRCGPGHGISIGSLGKYPDESEVRGIRIKNCTLSGTTNGLRIKSWPDKYPGAASEISFSEIVMTDVKNPIIIDQEYECYPNCKKKPSLVKLQNIHFANVRGTTTSELAVDLRCSKLYPCQGITVRDVDLKFGLAPTTSRCINTQPLFAGLLMPPSCL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04083 422 SUPERFAMILY Pectin lyase-like 47 422 IPR011050 -
Pste6g04083 422 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Pste6g04083 422 ProSitePatterns Polygalacturonase active site. 265 278 IPR000743 GO:0004650|GO:0005975
Pste6g04083 422 FunFam Pectin lyase-like superfamily protein 41 419 - -
Pste6g04083 422 PANTHER - 50 408 - -
Pste6g04083 422 Gene3D - 47 413 IPR012334 -
Pste6g04083 422 Pfam Glycosyl hydrolases family 28 84 409 IPR000743 GO:0004650|GO:0005975
Pste6g04083 422 SMART pbh1 235 256 IPR006626 -
Pste6g04083 422 SMART pbh1 208 234 IPR006626 -
Pste6g04083 422 SMART pbh1 185 205 IPR006626 -
Pste6g04083 422 SMART pbh1 288 309 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04083 Pste-Chr6 30104725 30106916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04083 51 421 Glycoside Hydrolase AT4G18180 43.814 2.76e-108 324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04083 6 30104725 30106916 Pste6g04083 6 30104725 30106916 ECH
Pste6g04083 6 30104725 30106916 Pste2g03137 2 31250414 31253593 PCT