Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04068 atgctagtggcattgctcttgctgctggcgtttggcaatgaagtcagagttaatggtgatggcggtggaggtagacaatgtgagattaatccagcactaaagtcacgaccacacactgtctccatcttggagtttggcgcggttggggatggtaaaacattgaacactattgcattccagaatgccattttctatctcaaatcatttgctgacaagggtggtgctcagctatatgtgccacctggaacatggctgactcaaagtatcaatcttactagccatctcacacttttcttggaaaaaggtgctgtaattcttggatctcaggatccatttcactgggaagtagtcgacccattaccttcttatggccgaggagttgaagttcctgggggaagataccagagtttgataaatggatacatgttaaacgatgtggtgataacaggtaataatggaagcattgatggcatgggattggcttggtgggaattgtatagctcccattccctgaactacagccgtccccatctgattgaattagtggcatccgatcatgtggtagtttcaaatcttacattcttaaacactcctgcatacagcattcacccagtttattgcagcaatgtacatattcacaatgtttcaatttctgctcctccaggatccccttatactgttggcatagtaccagattcttctgatcatgtttgtatagaggattgtgtcattgaaacgggctatgatgcaattgccctcaaaagtgggtgggacgaatatggcattgcctatggtaggccaactgagaatgtacacataagaagggtgcatctgcaagcttcttctggctctacaattgcatttggcagtgacatgtctggtggcatttcaaatattcttgtggagaatgttcatctttacaactcaaggagtggcattgaattcagaacaatgaggggcagaggtggttacatgaaggaaatcattatatctgacatagaaatggagaatatatacactgcaatgggtgccacaggttattgtgggtctcatcctgatgagaaatttgatcctaatgctcttccacttttggaccacattattttgcaagatatgattggctcaaacatcactattgctggaagcttcgctggactacaagaatctcccttcactaatatatgcctttccaacattactttgtctataaattctgtttcatccattccttgggaatgttcaaatgtctccggattttcagaatctgttcttcccaaaccctgtcctgaccttgagacccccaattcggattgtctctccctgcagagtatcaaggggaaaacttcagtactgtga 1356 0.0 MLVALLLLLAFGNEVRVNGDGGGGRQCEINPALKSRPHTVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTQSINLTSHLTLFLEKGAVILGSQDPFHWEVVDPLPSYGRGVEVPGGRYQSLINGYMLNDVVITGNNGSIDGMGLAWWELYSSHSLNYSRPHLIELVASDHVVVSNLTFLNTPAYSIHPVYCSNVHIHNVSISAPPGSPYTVGIVPDSSDHVCIEDCVIETGYDAIALKSGWDEYGIAYGRPTENVHIRRVHLQASSGSTIAFGSDMSGGISNILVENVHLYNSRSGIEFRTMRGRGGYMKEIIISDIEMENIYTAMGATGYCGSHPDEKFDPNALPLLDHIILQDMIGSNITIAGSFAGLQESPFTNICLSNITLSINSVSSIPWECSNVSGFSESVLPKPCPDLETPNSDCLSLQSIKGKTSVL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04068 451 Gene3D - 28 422 IPR012334 -
Pste6g04068 451 PANTHER PECTIN LYASE-RELATED 19 434 - -
Pste6g04068 451 SUPERFAMILY Pectin lyase-like 33 431 IPR011050 -
Pste6g04068 451 Pfam Glycosyl hydrolases family 28 136 417 IPR000743 GO:0004650|GO:0005975
Pste6g04068 451 SMART pbh1 234 255 IPR006626 -
Pste6g04068 451 SMART pbh1 296 317 IPR006626 -
Pste6g04068 451 SMART pbh1 184 206 IPR006626 -
Pste6g04068 451 SMART pbh1 268 290 IPR006626 -
Pste6g04068 451 SMART pbh1 207 233 IPR006626 -
Pste6g04068 451 Pfam Pectate lyase superfamily protein 40 97 IPR024535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04068 Pste-Chr6 29972119 29974854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04068 3 432 Glycoside Hydrolase AT3G06770 62.818 0.0 561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04068 6 29972119 29974854 Pste6g04068 6 29972119 29974854 ECH
Pste6g04068 6 29972119 29974854 Pste2g03118 2 31088719 31091728 PCT