Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04065 atgggagtcacaacctttacacaggaatacacctcctctgttgccccatcacgcatgttcaaggccttgatcgtagactccagaaacttgcttccgaagctcttacctcagtttgtaaaagatgtgaatgtaatccaaggagatggggaagctggaagcattgaacaagttaacttcaatgaagctagccccttcaaatatctgaaacacaggattgatgtgcttgataaggacaacttgctttgcaaatacactatgattgaaggggatcctttgggtgacaaccttgagtctataggttatgaggtaaagtttgaagccactagtgatggaggttgtctctgcaaaatgacaactaattacaacactattggagagtttgttgttaaagaggaagccgtaaaggaaggaagggaaagcactattgcaatttacaaagttgtggagtcatacctgcaggagaacccacaagtgtatgcctaa 483 0.0 MGVTTFTQEYTSSVAPSRMFKALIVDSRNLLPKLLPQFVKDVNVIQGDGEAGSIEQVNFNEASPFKYLKHRIDVLDKDNLLCKYTMIEGDPLGDNLESIGYEVKFEATSDGGCLCKMTTNYNTIGEFVVKEEAVKEGRESTIAIYKVVESYLQENPQVYA 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04065 160 FunFam Major pollen allergen Bet v 1-A 1 159 - -
Pste6g04065 160 Gene3D - 1 160 IPR023393 -
Pste6g04065 160 CDD Bet_v1-like 5 152 - -
Pste6g04065 160 Pfam Pathogenesis-related protein Bet v 1 family 1 152 IPR000916 GO:0006952
Pste6g04065 160 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pste6g04065 160 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pste6g04065 160 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pste6g04065 160 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pste6g04065 160 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pste6g04065 160 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pste6g04065 160 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pste6g04065 160 PANTHER - 1 158 - -
Pste6g04065 160 SUPERFAMILY Bet v1-like 2 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04065 Pste-Chr6 29947519 29948558 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04065 6 29947519 29948558 Pste6g04065 6 29947519 29948558 ECH
Pste2g03116 2 31069212 31075338 Pste6g04065 6 29947519 29948558 PCT