Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04061 atgggtgtttttaaattcgaggaggaaaacacatcccccgtggctcctgctaccctttacaaagctcttgttaaggatgctgataacctaatcccaaaggctgttgattccttcaagggtgttgaaatccttgagggaaatggtggccccggaaccattaagaagatctctttccttgaggatggggaaaccaagtttgtgttgcacaagattgaagcaatcgatgaggctaatttgggatatagctacagcatagttgggggtgttgccttgccacccactgtggagaagatcactttcgattccaaattggttgctggccccaacggaggctccattggcaaagtcactgtcacattccaaaccaaagcagacaatgctcttcccactgaagatgaactcaaaattggcaaagccaagggtgatgcccttttcaaagccattgaggcttaccttttggccaatcctcattacaactga 480 0.0 MGVFKFEEENTSPVAPATLYKALVKDADNLIPKAVDSFKGVEILEGNGGPGTIKKISFLEDGETKFVLHKIEAIDEANLGYSYSIVGGVALPPTVEKITFDSKLVAGPNGGSIGKVTVTFQTKADNALPTEDELKIGKAKGDALFKAIEAYLLANPHYN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04061 159 FunFam Major pollen allergen Bet v 1-A 1 159 - -
Pste6g04061 159 Gene3D - 2 159 IPR023393 -
Pste6g04061 159 Pfam Pathogenesis-related protein Bet v 1 family 1 155 IPR000916 GO:0006952
Pste6g04061 159 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 88 120 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pste6g04061 159 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pste6g04061 159 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pste6g04061 159 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pste6g04061 159 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pste6g04061 159 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pste6g04061 159 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pste6g04061 159 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pste6g04061 159 SUPERFAMILY Bet v1-like 2 159 - -
Pste6g04061 159 PANTHER - 1 157 - -
Pste6g04061 159 CDD Bet_v1-like 4 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04061 Pste-Chr6 29905539 29906394 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04061 6 29905539 29906394 Pste6g04061 6 29905539 29906394 ECH
Pste2g03110 2 31043875 31057372 Pste6g04061 6 29905539 29906394 PCT