Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03938 atggcttctctgtctctgcaactgagcggcctcaagtgctctctctttacgaaaccgtcgtccctttggagagggacgcagaagcagaagcagaagcagaagcagaagcgtctttcacttgtcatagtgaactcaattgcaataagcaatgcacagaacaaagagagagcgaagcttaagaagctgttcgaagaagcctacgagagatgccgcagtgctccgatggaaggtgtctccttcacccttgaagacttcactgccgctctggacaagtacgacttcgattctgaagtgggcagcaaggtcaaaggcactgtcttctacactgatgccaatggagctgttgttgatatcaccgctaagtcctccgcatatttgccactgcaggaggcctgcatccacagggttaagcatgtccatgaagccggcatcagagctggcttcaaagaggacttttttatcattggtgccaacgacgctgatgatagcttgatcttgagtttgaggtctatccagtatgatcttgcttgggagcgttgtagacagcttcaagctgaagatgttagtgtcaagggtaagattgtggggaccaacaaaggtggcgtggtggccgaggtggaaggccttagaggctttgttccattgtcacaaatatcaacgaactcaaatgtagaagagcttcttgataaggagattcctctcaagtttgtggaggtggatgaggaacaatccagacttgtgctgagtaaccgcaaggctgtagccggcaaccaggcacaactgggaattggatcagtggttactggctctgttcaaagcctgaagccgtatggtgccttcattgacattggtggaattaatggcctccttcatgttagtcagatcagtcatgaccgtgtaactgatatttcaactgtacttcaaccgggtgacgtattaaaggtaatgatcttaagtcatgaccgagagagaggtcgagtaagtctttccactaagaagttagagcccacacctggagacatgatccgcaatccaaagcttgtttttgagaaggcggaggagatggctcagacattcagacagagaatagcccaagcagaagctatggctcgagcagacatgcttaggttccagcctgagagtggattgactctcaccggtgatgcgatcctgggaccctttacttctgacttgcctgaagagggactggatctgagtgaggttccaccagctgaagaatcatga 1245 0.0 MASLSLQLSGLKCSLFTKPSSLWRGTQKQKQKQKQKRLSLVIVNSIAISNAQNKERAKLKKLFEEAYERCRSAPMEGVSFTLEDFTAALDKYDFDSEVGSKVKGTVFYTDANGAVVDITAKSSAYLPLQEACIHRVKHVHEAGIRAGFKEDFFIIGANDADDSLILSLRSIQYDLAWERCRQLQAEDVSVKGKIVGTNKGGVVAEVEGLRGFVPLSQISTNSNVEELLDKEIPLKFVEVDEEQSRLVLSNRKAVAGNQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDVLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLTGDAILGPFTSDLPEEGLDLSEVPPAEES 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03938 414 SUPERFAMILY Nucleic acid-binding proteins 189 254 IPR012340 -
Pste6g03938 414 SUPERFAMILY Nucleic acid-binding proteins 263 342 IPR012340 -
Pste6g03938 414 PANTHER 30S RIBOSOMAL PROTEIN S1 26 401 - -
Pste6g03938 414 SMART S1_6 185 251 IPR022967 -
Pste6g03938 414 SMART S1_6 97 169 IPR022967 -
Pste6g03938 414 SMART S1_6 262 332 IPR022967 -
Pste6g03938 414 Gene3D - 82 179 IPR012340 -
Pste6g03938 414 FunFam 30S ribosomal protein S1 260 339 - -
Pste6g03938 414 FunFam 30S ribosomal protein S1 83 180 - -
Pste6g03938 414 Gene3D - 180 258 IPR012340 -
Pste6g03938 414 SUPERFAMILY Nucleic acid-binding proteins 94 194 IPR012340 -
Pste6g03938 414 ProSiteProfiles S1 domain profile. 99 169 IPR003029 GO:0003676
Pste6g03938 414 MobiDBLite consensus disorder prediction 393 414 - -
Pste6g03938 414 Coils Coil 349 369 - -
Pste6g03938 414 CDD S1_RPS1_repeat_hs4 264 332 - -
Pste6g03938 414 FunFam 30S ribosomal protein S1, chloroplastic 181 257 - -
Pste6g03938 414 PRINTS Ribosomal protein S1 signature 117 131 IPR035104 -
Pste6g03938 414 PRINTS Ribosomal protein S1 signature 99 117 IPR035104 -
Pste6g03938 414 PRINTS Ribosomal protein S1 signature 190 206 IPR035104 -
Pste6g03938 414 PRINTS Ribosomal protein S1 signature 235 255 IPR035104 -
Pste6g03938 414 CDD S1_RPS1_repeat_ec2_hs2 187 251 - -
Pste6g03938 414 ProSiteProfiles S1 domain profile. 264 332 IPR003029 GO:0003676
Pste6g03938 414 Gene3D - 259 336 IPR012340 -
Pste6g03938 414 Pfam S1 RNA binding domain 263 332 IPR003029 GO:0003676
Pste6g03938 414 Pfam S1 RNA binding domain 186 249 IPR003029 GO:0003676
Pste6g03938 414 ProSiteProfiles S1 domain profile. 187 251 IPR003029 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03938 Pste-Chr6 28564789 28571762 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03938 6 28564789 28571762 Pste6g03938 6 28564789 28571762 ECH
Pste6g03938 6 28564789 28571762 Pste2g02968 2 29607280 29611865 PCT