Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03894 atggattcaatgtctctgtcttttggttcatccgtggtttggtatggagttccccatcacagccacggccacagccacagccgaagcagaaaccgaacccaaaacccttcaattggggtgattcggttgggcatttcagctcctcttgtgaaaaagcgtcactggaaacagggcgagtttcctgctacttcccaaccggacactcccaggaagacgcctcttaagaacctcaaaaagaaattggacaaaaagaacaatgccaaagcatgggtcaacaccgtcaccgaatccttatctgaacgcattgacaagaagcactggcttcaagctctccaggtatttgatatgcttagagaacaaaccttttaccaacccaaagaagggacttacatgaaactcattgtgttgcttggaaaatctggtcaaccccagcgggcccatcagctctttaccacaatgattgaagagggtttagaacctactcccgaactgtacacggcattgctcgccgcatattgcaagagcaacctgattgatgaggctttttcgcttcttaatgagatgaagaagcttcctctttgccagcctgatgttttcacttacagtaccttgatcaaagtttgtgtggatgcttttaaatttgatttggtcgagctgctgtatcaagaaatggcggaaagggctatcatgccaaacacggtcactcagaacattgttttgggtggttatggcaaggcggggaagtttgatcagatggagaaggtgctgtcgagtatgctggagagtactacatgcaagcctgatgtttggacaatgaacacgatcatcagtgtctttggtaacatgggtcaaatagatatgatggagaagtggtatgaaaaattccgtaattttggtatagaacctgaaacgcgcacttttaatattttgattggtgcatatgggaagagaagaatgtttgacaaaatgtcatctgttatggagtatatgcggaagttgcaatttccatggacgacctctacttataacaatgtgattgaggtgtttgcagatgcaggcgatgcaaggcacatggagtgtacatttgatcagatgcgtgctgagggtatgaaagcagataccaaaactttctgctgccttatcaatggttatgcgaaagcaggtctcttccataaagtaattagctgtgttcgcctggctggaaagtttgagatacctcagaatactgccttctataacgcagtcttatctgcgtgtgcaaaggcagaggatttgatggaaatcgagagagttttccagcgtatgaaagatagccaatgtcaaccagacaacacaacatacacaatcatgatcgaggcatatagaaaagagggcatgaatgacaaaatatactatttggagcaggaaaagcagatgatgacaactcatgataaagaagtgagccacattgaggatgaaacctttagctga 1470 0.0 MDSMSLSFGSSVVWYGVPHHSHGHSHSRSRNRTQNPSIGVIRLGISAPLVKKRHWKQGEFPATSQPDTPRKTPLKNLKKKLDKKNNAKAWVNTVTESLSERIDKKHWLQALQVFDMLREQTFYQPKEGTYMKLIVLLGKSGQPQRAHQLFTTMIEEGLEPTPELYTALLAAYCKSNLIDEAFSLLNEMKKLPLCQPDVFTYSTLIKVCVDAFKFDLVELLYQEMAERAIMPNTVTQNIVLGGYGKAGKFDQMEKVLSSMLESTTCKPDVWTMNTIISVFGNMGQIDMMEKWYEKFRNFGIEPETRTFNILIGAYGKRRMFDKMSSVMEYMRKLQFPWTTSTYNNVIEVFADAGDARHMECTFDQMRAEGMKADTKTFCCLINGYAKAGLFHKVISCVRLAGKFEIPQNTAFYNAVLSACAKAEDLMEIERVFQRMKDSQCQPDNTTYTIMIEAYRKEGMNDKIYYLEQEKQMMTTHDKEVSHIEDETFS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03894 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Pste6g03894 489 Gene3D Tetratricopeptide repeat domain 68 224 IPR011990 GO:0005515
Pste6g03894 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Pste6g03894 489 NCBIfam pentatricopeptide repeat 376 398 IPR002885 -
Pste6g03894 489 NCBIfam pentatricopeptide repeat 199 232 IPR002885 -
Pste6g03894 489 NCBIfam pentatricopeptide repeat 164 191 IPR002885 -
Pste6g03894 489 NCBIfam pentatricopeptide repeat 234 269 IPR002885 -
Pste6g03894 489 NCBIfam pentatricopeptide repeat 129 161 IPR002885 -
Pste6g03894 489 NCBIfam pentatricopeptide repeat 306 334 IPR002885 -
Pste6g03894 489 NCBIfam pentatricopeptide repeat 271 302 IPR002885 -
Pste6g03894 489 NCBIfam pentatricopeptide repeat 412 443 IPR002885 -
Pste6g03894 489 NCBIfam pentatricopeptide repeat 341 373 IPR002885 -
Pste6g03894 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Pste6g03894 489 Pfam PPR repeat 129 158 IPR002885 -
Pste6g03894 489 Pfam PPR repeat 237 262 IPR002885 -
Pste6g03894 489 PANTHER EXPRESSED PROTEIN 73 481 IPR044179 GO:0003729
Pste6g03894 489 Pfam PPR repeat family 165 208 IPR002885 -
Pste6g03894 489 Pfam PPR repeat family 408 454 IPR002885 -
Pste6g03894 489 Pfam PPR repeat family 267 314 IPR002885 -
Pste6g03894 489 Pfam PPR repeat family 339 386 IPR002885 -
Pste6g03894 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Pste6g03894 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 267 IPR002885 -
Pste6g03894 489 Gene3D Tetratricopeptide repeat domain 225 358 IPR011990 GO:0005515
Pste6g03894 489 Gene3D Tetratricopeptide repeat domain 359 488 IPR011990 GO:0005515
Pste6g03894 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Pste6g03894 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 126 160 IPR002885 -
Pste6g03894 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03894 Pste-Chr6 28145520 28148850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03894 124 469 Glycosyltransferase AT1G05670 23.580 7.39e-26 109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03894 6 28145520 28148850 Pste6g03894 6 28145520 28148850 ECH
Pste6g03894 6 28145520 28148850 Pste2g01108 2 11988225 11991963 PCT