Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01108 ATTTTGCTTCAGTTATCTGTGTGTGTTACCCTGTTTCCATGGCTTCAATGTCCCTCTCACTTTCTTCTTTCATTCTTCCTTCTCCAATCCCCCACAAGAACTCCACAACAAAAGATGCGATTTTTCGGTTCACCCGCGTCTCAATTGCAGCTCCAGCGTCCAAAACCACTGTGTATGCATCTTCTACTCGAAAACCAGCTCCAGCTCCGAGAACCAGAAACCCTAAAGAAAAGGAATTTTCCCAAACATTGTTTTTTGAGTGTATGGATAAGAAACCCATCAAAAAGAAAAAGAAGATGAAGGAGAAAAAGAACGATCCTAAGGTTTGGGTCCACACTCTCCCTGAAGTCTTATCGTATCGAATTCACAAGAAGCACTGGATTATTGCCCTTCAGTTATTTGACTTGCTTAGAGAGCAACCCTATTATCAGCCCAGGGAAGATACTTACATGAAACTCATTGTATTGCTTGGAAAATCCGGTCAACCCCATCATGCAAACCAACTTTTTAACTCTATACATGAAGATGGTTGTGAAAATACTGAACTTTACACAGCCTTAATTGCAGCATATTGTCAGAACAACCTGGTTAATGAGGCATTACCAATTCTTGATGAGATGATGAACCTCCCCCGTTGCCAGCCTGATATTTCCACATACAGTATCTTGGTAAAGGCTCTTGTGGATGGTTTGAAGTTAGAAATGGTTGAATTGTTATATGATAAAATGGCTGAAAGGTCTATCATGCCTAACACACTCATCCAGAACACTGTCCTGAGTGGTTATGGTAAGACTAGGAGGTTTGATCAGGTGGAGAAAATAGTGTCAAGTATGATGGAGAGCACTTCATGCAAGCCTGATGTTTGGACAATGAATACTGTCATCAGTGTCTTTGGTGATAATGGTCAAATTGATATGATGGAGAAATGGTATGAAAAATTTTGTAATTATGGGATACAACCACAAAGGAGCACTTTTAATACTTTAATTGCAGCTTATGGTAATCAAAGAATGTATGACAAAATGTCCTCAGTTATGCAGACTATGCGAAAGGTAAAATGTCCATGGACAACCTCAACTTATAACAATGTGATTGAGGCATTTGCTGCTCTAGGTGATGCTAAAAACATGGAACATGCATTTGATCAAATGTGTGCTGAGGGTTTGAAAGCAGATACTAAGACTTTCTTCTGCCTTATAAATGGTTATGCTAATGCAGGTATCTTCCATAAAGTAATTAGCAGTGTTAGTTTGGCTGAAAAACTAGAGATACCTGTGAATACTTCCTTTTACAATGCCGTCATATCTGCATGTGCAAAGGAAGAATCTTTCATGGAAATGGAAAGATTTTTCAAGCATATGAAAGAAAAAGGATGTCTACCCGATAACACAACCTACTCTATCATGATTGAAGCATACAGAAAAGAAAATATGAATGACAAAATATACTATTTGGAGCAGGAAAAGAAGATGATGATATCTGATGACAAAAAATTAAATGAGCTTGAGGAGACAATCCTTGGTTGATTTGGAAGTCAGTATCTGCCACCCCTCCATCCTTTTGAAGCAGCAGTTGGTATTTTTTCAATATGACATGAAAGAACCAATCAGTTGGGTACTCTAGCTTCTTTTCTCATGATGAATGACGACTCCTACCTAAATGTAGATTTATAGTAAATATTGTTGCCATCATTTTGTGTTTTGATGCCAATAGCTTTATGGTTCTTCAAAAATACATGGAGTCTTGAACACCATGAAATGAAAATAATATTTTGGTGACATTAAAATCTCTTCTGACAGCAGACATTTAGCAGTGAATAGCTTTCTTGAAGGGTTTTATTCATCAATTTCAGTTCACTTTTTGCATCAGTAGAAGGAGCTGAAATTCCTGCATTTTGATATATTTCTCCTGCCCTTATGATGAAACTAGGAAAAAATTACTTCCGTAGAAACTCTAGTG 1959 0.3757 MASMSLSLSSFILPSPIPHKNSTTKDAIFRFTRVSIAAPASKTTVYASSTRKPAPAPRTRNPKEKEFSQTLFFECMDKKPIKKKKKMKEKKNDPKVWVHTLPEVLSYRIHKKHWIIALQLFDLLREQPYYQPREDTYMKLIVLLGKSGQPHHANQLFNSIHEDGCENTELYTALIAAYCQNNLVNEALPILDEMMNLPRCQPDISTYSILVKALVDGLKLEMVELLYDKMAERSIMPNTLIQNTVLSGYGKTRRFDQVEKIVSSMMESTSCKPDVWTMNTVISVFGDNGQIDMMEKWYEKFCNYGIQPQRSTFNTLIAAYGNQRMYDKMSSVMQTMRKVKCPWTTSTYNNVIEAFAALGDAKNMEHAFDQMCAEGLKADTKTFFCLINGYANAGIFHKVISSVSLAEKLEIPVNTSFYNAVISACAKEESFMEMERFFKHMKEKGCLPDNTTYSIMIEAYRKENMNDKIYYLEQEKKMMISDDKKLNELEETILG 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01108 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 273 IPR002885 -
Pste2g01108 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Pste2g01108 495 PANTHER EXPRESSED PROTEIN 38 476 IPR044179 GO:0003729
Pste2g01108 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Pste2g01108 495 Pfam PPR repeat 136 165 IPR002885 -
Pste2g01108 495 Gene3D Tetratricopeptide repeat domain 220 363 IPR011990 GO:0005515
Pste2g01108 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Pste2g01108 495 Gene3D Tetratricopeptide repeat domain 76 216 IPR011990 GO:0005515
Pste2g01108 495 Gene3D Tetratricopeptide repeat domain 364 492 IPR011990 GO:0005515
Pste2g01108 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 197 IPR002885 -
Pste2g01108 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Pste2g01108 495 Pfam PPR repeat family 167 215 IPR002885 -
Pste2g01108 495 Pfam PPR repeat family 414 460 IPR002885 -
Pste2g01108 495 Coils Coil 472 492 - -
Pste2g01108 495 NCBIfam pentatricopeptide repeat 277 308 IPR002885 -
Pste2g01108 495 NCBIfam pentatricopeptide repeat 418 449 IPR002885 -
Pste2g01108 495 NCBIfam pentatricopeptide repeat 347 379 IPR002885 -
Pste2g01108 495 NCBIfam pentatricopeptide repeat 312 344 IPR002885 -
Pste2g01108 495 NCBIfam pentatricopeptide repeat 243 275 IPR002885 -
Pste2g01108 495 NCBIfam pentatricopeptide repeat 136 166 IPR002885 -
Pste2g01108 495 NCBIfam pentatricopeptide repeat 170 203 IPR002885 -
Pste2g01108 495 Pfam Pentatricopeptide repeat domain 303 355 IPR002885 -
Pste2g01108 495 Pfam Pentatricopeptide repeat domain 226 288 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01108 Pste-Chr2 11988225 11991963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01108 171 479 Glycosyltransferase AT1G05670 23.397 2.86e-21 95.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01108 2 11988225 11991963 Pste2g01108 2 11988225 11991963 ECH
Pste6g03894 6 28145520 28148850 Pste2g01108 2 11988225 11991963 PCT