LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g03809	atggcaactgagagtccaatcaggatctctgaagctgggggtaaatggccatctcttaaggaagctacaacttttggttcaccatcccgtcacatggaaacagaggatctgggtatatttttaaacggccataggtttcatggcagtggaaaggacatggtacccaatcgcagtggcagtgcacctccaagcatggaaggttcattccttgccattgaaaacttgttaactcagaacaccacccggaatgtgagcttgggatctctgaacagagctatgcaaaaatatgatagtggtaaagggccttttcaattgtcacgagggactcttgcaacacataaggaggagaccgaggatgattcgacccagcagctgtatgataatgagttagataaggctagtggaaaatggcatagacaggatttggcttcgacatcatctcactgcaaaacattagtactggaagatagtccgcagatcatgccacctatatataataagtctcttggagtggtggatgaactaattgatgtagatactggttccacttcttctcatgatcctcctgtcaccacagtggaggctgtgaaacctaccttaggtgctgatgatattaggctgtcatcaactgttgattcccatgtccctgtgactagctcatcatctctcaattccactgaaagcaggggttttaatgactcagatgttgcaattgtagaatctcaattaaggggtctgaatgtatctaatctactaaattcagaaagccagagttatgaagataaatggaagaaaagcttccagaataatttgatgcaacatcagcaacagaactatccatgtgaagtgcctagcatcaattctcaaagtgacaaatgtgcatacattggtatggaacagtttcttcacaatacaagcaagttctcctctgatgtccagcctgtactgcaatcatcagggtatacacctccactatatgctacggcagctgcttatatgacttcagcaaatccattttacactaatttgcatgcttcgggtatatattctcctcaatatgtaggagcatacccttttagtcccacagctgttcctccatatattgctgcataccctcctcatggttctgtatcacttgttgagggggctactggttctagttttactccccaagcaccaggggtttcttctacttcaggaaacatttcacatggagctgaaatgatacatgcaaacaagttttttggacaatttggatttcctctgcagccgtcttttgctgatcctatttacatgcaatatcatcagcaaccttttgcagagggatatggtggatctggtcatctgctggcacctagagccagttttggtggcccttttgattcccccaaaagacccagtaacggtgcttacttggatgaaaaaaaattacataatcagagaagtagtgctaatttaaattctaatagaggtgggctaatacatcctggttattttggacacccttcaaatatgggtttcgtaacccagtatccaagttccccactttctcaaccagttttgtctggatatccagaaagtagtcctggccttctaggtggaaggaatgaaatgaaacaccccccggcatctggtaaaaatggaggtttattatctggatggcaaggtcaaagaacctttgacagtggtcatgaccccaaaattgctatttttcttgaagagttaaaatctggcaaaggtcgcagatttgagctatctgatattattggacatatagttgacactgatcagcatgggagccgttttatacagcagaagttggaaagctgtgctgttgaagagaaggacttagtgttcaaagaggttcttccacatacttctaaattaatgactgatgtatttggcaactatgttatccaaaagttttttgagtatggaaaccctgaccagagaaaggaacttgcaaatcgacttcttggtcagatactgcctttaagtctacagatgtatggttgtcgtgtaatccaaaaggatctctga	2040	0.0	MATESPIRISEAGGKWPSLKEATTFGSPSRHMETEDLGIFLNGHRFHGSGKDMVPNRSGSAPPSMEGSFLAIENLLTQNTTRNVSLGSLNRAMQKYDSGKGPFQLSRGTLATHKEETEDDSTQQLYDNELDKASGKWHRQDLASTSSHCKTLVLEDSPQIMPPIYNKSLGVVDELIDVDTGSTSSHDPPVTTVEAVKPTLGADDIRLSSTVDSHVPVTSSSSLNSTESRGFNDSDVAIVESQLRGLNVSNLLNSESQSYEDKWKKSFQNNLMQHQQQNYPCEVPSINSQSDKCAYIGMEQFLHNTSKFSSDVQPVLQSSGYTPPLYATAAAYMTSANPFYTNLHASGIYSPQYVGAYPFSPTAVPPYIAAYPPHGSVSLVEGATGSSFTPQAPGVSSTSGNISHGAEMIHANKFFGQFGFPLQPSFADPIYMQYHQQPFAEGYGGSGHLLAPRASFGGPFDSPKRPSNGAYLDEKKLHNQRSSANLNSNRGGLIHPGYFGHPSNMGFVTQYPSSPLSQPVLSGYPESSPGLLGGRNEMKHPPASGKNGGLLSGWQGQRTFDSGHDPKIAIFLEELKSGKGRRFELSDIIGHIVDTDQHGSRFIQQKLESCAVEEKDLVFKEVLPHTSKLMTDVFGNYVIQKFFEYGNPDQRKELANRLLGQILPLSLQMYGCRVIQKDL	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g03809	679	SUPERFAMILY	ARM repeat	582	677	IPR016024	-
	Pste6g03809	679	MobiDBLite	consensus disorder prediction	523	557	-	-
	Pste6g03809	679	ProSiteProfiles	Pumilio homology domain (PUM-HD) profile.	555	679	IPR033133	GO:0003723
	Pste6g03809	679	ProSiteProfiles	Pumilio RNA-binding repeat profile.	657	679	IPR001313	GO:0003723
	Pste6g03809	679	SMART	pum_5	587	620	IPR001313	GO:0003723
	Pste6g03809	679	SMART	pum_5	621	656	IPR001313	GO:0003723
	Pste6g03809	679	Gene3D	-	569	679	IPR011989	-
	Pste6g03809	679	PANTHER	RNA BINDING PROTEIN PUMILIO-RELATED	228	677	-	-
	Pste6g03809	679	MobiDBLite	consensus disorder prediction	1	30	-	-
	Pste6g03809	679	ProSiteProfiles	Pumilio RNA-binding repeat profile.	621	656	IPR001313	GO:0003723
	Pste6g03809	679	Pfam	Pumilio-family RNA binding repeat	661	677	IPR001313	GO:0003723
	Pste6g03809	679	Pfam	Pumilio-family RNA binding repeat	595	623	IPR001313	GO:0003723
	Pste6g03809	679	Pfam	Pumilio-family RNA binding repeat	628	657	IPR001313	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g03809	Pste-Chr6	27304523	27308534	Dispersed/Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste6g03809	6	27304523	27308534	Pste2g03369	2	33753456	33768316	PCT